Variant report

Variant	rs11081757
Chromosome Location	chr18:29896788-29896789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29896360..29897935-chr18:29901825..29904220,2	K562	blood:
2	chr18:29895037..29897248-chr18:29897872..29900366,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10502587	0.82[CEU][hapmap]
rs10502591	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10502594	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10853420	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11872355	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11872811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11874036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11876823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs13381184	1.00[CHB][hapmap]
rs16963314	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963360	0.84[ASN][1000 genomes]
rs16963365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963382	1.00[JPT][hapmap]
rs17736440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17736489	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1841119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3073261	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55730180	0.84[ASN][1000 genomes]
rs55861080	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55976613	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57230958	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57546420	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58435646	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58863502	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59340191	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59452754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630704	0.81[ASN][1000 genomes]
rs60154857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214917	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60949633	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs7226639	0.82[CEU][hapmap]
rs73954806	0.84[ASN][1000 genomes]
rs73954807	0.84[ASN][1000 genomes]
rs73956875	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956877	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956881	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73956882	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73956890	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73956898	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73958413	0.84[ASN][1000 genomes]
rs73958418	0.84[ASN][1000 genomes]
rs73958422	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29880800-29897000	Weak transcription	Lung	lung
3	chr18:29883000-29897000	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29883000-29897000	Weak transcription	Left Ventricle	heart
5	chr18:29883400-29896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr18:29889200-29896800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr18:29889400-29904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:29890200-29898800	Weak transcription	Liver	Liver
9	chr18:29890200-29902200	Weak transcription	Spleen	Spleen
10	chr18:29890400-29897000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:29890400-29897000	Weak transcription	NH-A	brain
12	chr18:29890400-29904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr18:29890800-29896800	Weak transcription	Fetal Stomach	stomach
14	chr18:29891000-29896800	Weak transcription	Brain Angular Gyrus	brain
15	chr18:29891000-29897400	Weak transcription	Fetal Kidney	kidney
16	chr18:29891000-29898400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:29891000-29905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
19	chr18:29891200-29896800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr18:29891200-29905600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr18:29892400-29897000	Weak transcription	Fetal Intestine Large	intestine
22	chr18:29892800-29896800	Weak transcription	Right Ventricle	heart
23	chr18:29893200-29896800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr18:29893200-29896800	Weak transcription	Brain Hippocampus Middle	brain
25	chr18:29893200-29897000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr18:29893400-29897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr18:29893400-29897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr18:29893400-29903200	Weak transcription	Pancreas	Pancrea
29	chr18:29894200-29897800	Weak transcription	Small Intestine	intestine
30	chr18:29895600-29897000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr18:29895600-29897000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr18:29895600-29897600	Enhancers	HSMM	muscle
33	chr18:29895800-29897400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr18:29895800-29897800	Enhancers	Stomach Mucosa	stomach
35	chr18:29895800-29898600	Enhancers	Brain Cingulate Gyrus	brain
36	chr18:29895800-29898800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr18:29895800-29898800	Enhancers	Osteobl	bone
38	chr18:29896000-29896800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr18:29896000-29899200	Enhancers	Brain Substantia Nigra	brain
40	chr18:29896200-29896800	Weak transcription	Brain Anterior Caudate	brain
41	chr18:29896200-29898400	Weak transcription	Fetal Heart	heart
42	chr18:29896400-29897000	Enhancers	Aorta	Aorta
43	chr18:29896400-29897200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr18:29896400-29897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr18:29896400-29897200	Enhancers	Fetal Muscle Trunk	muscle
46	chr18:29896400-29897400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr18:29896400-29897400	Enhancers	Ovary	ovary
48	chr18:29896400-29899200	Enhancers	Fetal Muscle Leg	muscle
49	chr18:29896600-29897200	Enhancers	Psoas Muscle	Psoas
50	chr18:29896600-29897200	Enhancers	Sigmoid Colon	Sigmoid Colon

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