Variant report

Variant	rs10502587
Chromosome Location	chr18:29920430-29920431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10048362	0.81[EUR][1000 genomes]
rs10502596	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs11081757	0.82[CEU][hapmap]
rs11872811	0.85[CEU][hapmap]
rs11873319	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11873325	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11874036	0.85[CEU][hapmap]
rs11876823	0.85[CEU][hapmap]
rs13381088	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs16963233	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16963326	0.86[JPT][hapmap]
rs16963334	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs17736440	0.82[CEU][hapmap]
rs1841119	0.85[CEU][hapmap]
rs28500590	0.81[EUR][1000 genomes]
rs3786308	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs3786310	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs3826611	0.87[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs59211646	0.81[EUR][1000 genomes]
rs7226639	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7227973	0.84[ASN][1000 genomes]
rs73958414	0.81[EUR][1000 genomes]
rs73958415	0.81[EUR][1000 genomes]
rs753784	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8085211	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
3	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
4	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:29906800-29922200	Weak transcription	Ovary	ovary
7	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
8	chr18:29907800-29921800	Weak transcription	Liver	Liver
9	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr18:29912800-29923800	Weak transcription	Lung	lung
11	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
12	chr18:29914000-29923400	Weak transcription	Right Ventricle	heart
13	chr18:29915000-29923400	Weak transcription	Fetal Muscle Leg	muscle
14	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr18:29916000-29921800	Weak transcription	Pancreas	Pancrea
16	chr18:29916000-29923800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr18:29916000-29924000	Weak transcription	Brain Anterior Caudate	brain
18	chr18:29916000-29925000	Weak transcription	Brain Angular Gyrus	brain
19	chr18:29916000-29925000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:29919400-29926600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:29919600-29922200	Weak transcription	Small Intestine	intestine
22	chr18:29920000-29921800	Weak transcription	Fetal Intestine Large	intestine
23	chr18:29920000-29921800	Weak transcription	Fetal Intestine Small	intestine
24	chr18:29920000-29922200	Weak transcription	Left Ventricle	heart
25	chr18:29920000-29930200	Weak transcription	Stomach Mucosa	stomach
26	chr18:29920200-29922000	Weak transcription	Fetal Heart	heart
27	chr18:29920200-29923800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links