Variant report

Variant	rs73958414
Chromosome Location	chr18:29981975-29981976
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10048362	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468834	0.85[EUR][1000 genomes]
rs10502587	0.81[EUR][1000 genomes]
rs10502596	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504782	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11665147	0.91[ASN][1000 genomes]
rs11665150	0.91[ASN][1000 genomes]
rs11665190	0.87[ASN][1000 genomes]
rs11873319	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11873325	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381088	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381344	0.91[ASN][1000 genomes]
rs1350551	0.85[EUR][1000 genomes]
rs16963233	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963270	0.89[ASN][1000 genomes]
rs16963287	0.86[ASN][1000 genomes]
rs16963289	0.91[ASN][1000 genomes]
rs16963326	0.91[ASN][1000 genomes]
rs16963334	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17744064	0.88[EUR][1000 genomes]
rs17811714	0.85[EUR][1000 genomes]
rs17811798	0.85[EUR][1000 genomes]
rs1863605	0.85[EUR][1000 genomes]
rs1964517	0.89[ASN][1000 genomes]
rs2034968	0.89[ASN][1000 genomes]
rs2421462	0.85[ASN][1000 genomes]
rs28500590	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3786308	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786310	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3826611	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41527551	0.89[ASN][1000 genomes]
rs55941037	0.85[EUR][1000 genomes]
rs56808255	0.92[ASN][1000 genomes]
rs59211646	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61311884	0.85[EUR][1000 genomes]
rs7226639	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs729692	0.85[EUR][1000 genomes]
rs729693	0.85[EUR][1000 genomes]
rs73954814	0.85[EUR][1000 genomes]
rs73958415	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs753784	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8085211	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8097263	0.91[ASN][1000 genomes]
rs968099	0.82[ASN][1000 genomes]
rs9807749	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347612	chr18:29975003-29990362	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29964800-29985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:29966800-29985400	Weak transcription	Right Ventricle	heart
4	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
5	chr18:29980200-29982400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:29981000-29982400	Weak transcription	Ovary	ovary
7	chr18:29981400-29982000	Enhancers	Fetal Lung	lung
8	chr18:29981400-29982800	Enhancers	Colon Smooth Muscle	Colon
9	chr18:29981400-29982800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr18:29981600-29982800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr18:29981800-29982000	Enhancers	Stomach Mucosa	stomach
12	chr18:29981800-29982800	Enhancers	Brain Hippocampus Middle	brain
13	chr18:29981800-29986800	Weak transcription	Adipose Nuclei	Adipose

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