Variant report

Variant	rs1841119
Chromosome Location	chr18:29905935-29905936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10502587	0.85[CEU][hapmap]
rs10502591	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10502594	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10502600	1.00[JPT][hapmap]
rs10853420	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11081757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11504784	0.84[ASN][1000 genomes]
rs11872355	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11872811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16963314	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16963351	0.84[ASN][1000 genomes]
rs16963353	1.00[CHB][hapmap]
rs16963365	1.00[CHB][hapmap]
rs17736440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17736489	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17743259	0.82[CEU][hapmap]
rs3073261	0.86[EUR][1000 genomes]
rs55861080	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55976613	1.00[EUR][1000 genomes]
rs57230958	0.97[EUR][1000 genomes]
rs57546420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58220828	0.84[ASN][1000 genomes]
rs58435646	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58863502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59340191	0.97[EUR][1000 genomes]
rs59452754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60154857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60214917	0.86[EUR][1000 genomes]
rs60949633	1.00[EUR][1000 genomes]
rs619154	0.82[CHB][hapmap]
rs7226639	0.85[CEU][hapmap]
rs7230250	0.81[ASN][1000 genomes]
rs73954805	0.84[ASN][1000 genomes]
rs73956875	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956877	0.97[EUR][1000 genomes]
rs73956878	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956881	0.97[EUR][1000 genomes]
rs73956882	0.95[EUR][1000 genomes]
rs73956890	0.86[EUR][1000 genomes]
rs73956898	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
3	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
5	chr18:29897400-29909000	Weak transcription	Left Ventricle	heart
6	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
7	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr18:29898000-29906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:29898000-29906400	Weak transcription	Small Intestine	intestine
10	chr18:29898000-29906600	Weak transcription	Brain Angular Gyrus	brain
11	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
12	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr18:29899800-29908400	Weak transcription	Stomach Mucosa	stomach
14	chr18:29900000-29906000	Weak transcription	Fetal Heart	heart
15	chr18:29902600-29907400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr18:29903400-29915800	Weak transcription	Fetal Brain Male	brain
17	chr18:29903600-29906400	Weak transcription	Psoas Muscle	Psoas
18	chr18:29904200-29913200	Weak transcription	Pancreas	Pancrea
19	chr18:29904200-29913800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr18:29904200-29915200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:29904400-29906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:29904400-29906600	Weak transcription	Fetal Muscle Leg	muscle
23	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr18:29904600-29906600	Weak transcription	Fetal Kidney	kidney
25	chr18:29904600-29906600	Weak transcription	Fetal Lung	lung
26	chr18:29904600-29917200	Weak transcription	HMEC	breast
27	chr18:29904800-29906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:29904800-29906200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr18:29904800-29906400	Weak transcription	HSMM	muscle
30	chr18:29904800-29906800	Enhancers	Adipose Nuclei	Adipose
31	chr18:29905000-29906000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:29905000-29906200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:29905000-29906200	Weak transcription	Osteobl	bone
34	chr18:29905000-29908800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr18:29905400-29907000	Enhancers	Right Ventricle	heart
36	chr18:29905400-29907000	Enhancers	HSMMtube	muscle
37	chr18:29905400-29907800	Enhancers	Brain Anterior Caudate	brain
38	chr18:29905400-29907800	Enhancers	Brain Cingulate Gyrus	brain
39	chr18:29905400-29908200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr18:29905600-29906400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr18:29905600-29906600	Enhancers	Stomach Smooth Muscle	stomach
42	chr18:29905600-29906800	Enhancers	Ovary	ovary
43	chr18:29905600-29907200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr18:29905600-29907800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:29905600-29907800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr18:29905600-29907800	Enhancers	Brain Substantia Nigra	brain
47	chr18:29905600-29907800	Enhancers	Rectal Smooth Muscle	rectum
48	chr18:29905800-29906000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:29905800-29906800	Weak transcription	HepG2	liver
50	chr18:29905800-29907000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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