Variant report

Variant	rs16963351
Chromosome Location	chr18:30000512-30000513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29999315..30001199-chr18:30050512..30052536,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10502591	0.98[EUR][1000 genomes]
rs10502594	1.00[EUR][1000 genomes]
rs10502600	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10853420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11504783	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11504784	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11872355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11872811	0.84[ASN][1000 genomes]
rs11874036	0.84[ASN][1000 genomes]
rs11876823	0.84[ASN][1000 genomes]
rs13381184	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963314	1.00[EUR][1000 genomes]
rs16963353	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963360	0.94[EUR][1000 genomes]
rs16963365	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963373	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16963382	0.86[EUR][1000 genomes]
rs17736440	0.85[EUR][1000 genomes]
rs17736489	0.98[EUR][1000 genomes]
rs1841119	0.84[ASN][1000 genomes]
rs3073261	0.85[EUR][1000 genomes]
rs4644922	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55730180	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58220828	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630704	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60214917	0.85[EUR][1000 genomes]
rs73954805	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954806	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73954807	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73956890	0.81[EUR][1000 genomes]
rs73956898	0.85[EUR][1000 genomes]
rs73958413	1.00[EUR][1000 genomes]
rs73958418	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73958422	0.94[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
2	chr18:29996400-30000800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr18:29997800-30002200	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29998200-30002400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
7	chr18:29999000-30001000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr18:29999000-30001800	Enhancers	Colon Smooth Muscle	Colon
9	chr18:29999000-30005600	Enhancers	Brain Hippocampus Middle	brain
10	chr18:29999200-30000600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr18:29999200-30001800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
13	chr18:29999400-30001000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr18:29999400-30005400	Enhancers	Fetal Heart	heart
15	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
16	chr18:29999600-30000600	Enhancers	Liver	Liver
17	chr18:29999600-30000600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr18:29999600-30000800	Enhancers	HUVEC	blood vessel
19	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
20	chr18:29999800-30000600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr18:29999800-30001400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr18:29999800-30001400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr18:29999800-30003600	Enhancers	Adipose Nuclei	Adipose
24	chr18:29999800-30003800	Enhancers	Brain Angular Gyrus	brain
25	chr18:30000000-30001400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr18:30000000-30001400	Enhancers	Fetal Kidney	kidney
27	chr18:30000200-30000600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr18:30000200-30001000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr18:30000200-30001600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr18:30000200-30001800	Enhancers	Left Ventricle	heart
31	chr18:30000400-30000600	Enhancers	Primary hematopoietic stem cells	blood
32	chr18:30000400-30000600	Enhancers	Fetal Lung	lung
33	chr18:30000400-30000600	Enhancers	Lung	lung
34	chr18:30000400-30000600	Enhancers	Ovary	ovary
35	chr18:30000400-30000600	Enhancers	Small Intestine	intestine
36	chr18:30000400-30001000	Enhancers	Fetal Muscle Leg	muscle
37	chr18:30000400-30001400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr18:30000400-30001600	Enhancers	Aorta	Aorta
39	chr18:30000400-30001800	Enhancers	Psoas Muscle	Psoas
40	chr18:30000400-30002400	Enhancers	Right Atrium	heart
41	chr18:30000400-30005600	Enhancers	Fetal Brain Male	brain

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