Variant report

Variant	rs55730180
Chromosome Location	chr18:30014584-30014585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30010280..30012190-chr18:30014297..30016244,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10502591	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502594	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502600	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10853420	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11081757	0.84[ASN][1000 genomes]
rs11504783	0.80[AMR][1000 genomes]
rs11504784	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11872355	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13381184	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963314	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963351	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16963353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963360	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963373	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16963382	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17736440	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736489	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3073261	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644922	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55861080	0.84[ASN][1000 genomes]
rs55976613	0.84[ASN][1000 genomes]
rs57230958	0.84[ASN][1000 genomes]
rs57546420	0.84[ASN][1000 genomes]
rs58220828	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58435646	0.84[ASN][1000 genomes]
rs58863502	0.84[ASN][1000 genomes]
rs59340191	0.84[ASN][1000 genomes]
rs59452754	0.84[ASN][1000 genomes]
rs59630704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60154857	0.84[ASN][1000 genomes]
rs60214917	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949633	0.84[ASN][1000 genomes]
rs73954805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73954806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956875	0.84[ASN][1000 genomes]
rs73956877	0.84[ASN][1000 genomes]
rs73956878	0.84[ASN][1000 genomes]
rs73956881	0.88[ASN][1000 genomes]
rs73956882	0.88[ASN][1000 genomes]
rs73956890	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73956898	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958413	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958418	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958422	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
4	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
5	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
7	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
8	chr18:30007600-30017000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr18:30008600-30017400	Weak transcription	Aorta	Aorta
10	chr18:30010200-30014800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:30010200-30015600	Weak transcription	Brain Hippocampus Middle	brain
12	chr18:30010800-30017000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:30010800-30018200	Weak transcription	Left Ventricle	heart
14	chr18:30011000-30018400	Weak transcription	Right Ventricle	heart
15	chr18:30011200-30017200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
17	chr18:30013000-30015000	Weak transcription	Liver	Liver
18	chr18:30014200-30014600	Enhancers	Small Intestine	intestine
19	chr18:30014200-30015400	Enhancers	Duodenum Smooth Muscle	Duodenum

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