Variant report

Variant	rs729691
Chromosome Location	chr18:30031768-30031769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30017894..30019395-chr18:30030644..30032301,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1037753	0.90[YRI][hapmap]
rs10438935	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs10468833	0.83[ASN][1000 genomes]
rs10468834	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs10468904	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10775451	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs10853421	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs11081761	0.82[CHB][hapmap]
rs11081763	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs11081764	0.83[ASN][1000 genomes]
rs11081765	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs11662168	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11874614	0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12604457	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs13380944	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs13380952	0.86[ASN][1000 genomes]
rs13380968	0.84[ASN][1000 genomes]
rs1350551	0.91[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1380085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458858	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs1458865	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16963381	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17744051	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs17744064	0.91[ASN][1000 genomes]
rs17744164	0.89[CHB][hapmap];0.94[ASN][1000 genomes]
rs17811666	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs17811690	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs17811714	0.91[ASN][1000 genomes]
rs17811798	0.91[ASN][1000 genomes]
rs1863605	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs2052757	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2055060	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs55941037	0.91[ASN][1000 genomes]
rs57978863	0.81[ASN][1000 genomes]
rs60928334	0.83[ASN][1000 genomes]
rs61311884	0.91[ASN][1000 genomes]
rs6506968	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs7228553	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7229026	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs7243086	0.83[ASN][1000 genomes]
rs7243481	0.83[ASN][1000 genomes]
rs7243539	0.86[ASN][1000 genomes]
rs7245123	0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs72933532	0.81[ASN][1000 genomes]
rs72933545	0.83[ASN][1000 genomes]
rs729692	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs729693	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs7359734	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs73954814	0.90[ASN][1000 genomes]
rs8083848	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs8087581	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs8087781	0.96[ASN][1000 genomes]
rs8089997	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs8091089	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs8093474	0.80[ASN][1000 genomes]
rs8093807	0.83[ASN][1000 genomes]
rs8094711	0.94[ASN][1000 genomes]
rs8094914	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs8096329	0.83[ASN][1000 genomes]
rs968177	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs968178	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9807749	0.91[ASN][1000 genomes]
rs982521	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
4	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
5	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
6	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
7	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
9	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr18:30029800-30032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
15	chr18:30030000-30032200	Weak transcription	Fetal Intestine Large	intestine
16	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr18:30030600-30031800	Enhancers	Brain Substantia Nigra	brain
18	chr18:30030600-30031800	Enhancers	Stomach Mucosa	stomach
19	chr18:30030800-30032600	Enhancers	Liver	Liver
20	chr18:30030800-30033400	Weak transcription	Brain Anterior Caudate	brain
21	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr18:30030800-30034400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine
24	chr18:30031000-30034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr18:30031200-30033400	Weak transcription	Pancreas	Pancrea
26	chr18:30031200-30037400	Weak transcription	Psoas Muscle	Psoas
27	chr18:30031200-30048400	Weak transcription	Fetal Muscle Leg	muscle
28	chr18:30031400-30048200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr18:30031600-30032000	Weak transcription	Brain Hippocampus Middle	brain

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