Variant report

Variant	rs8089997
Chromosome Location	chr18:30000561-30000562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1037753	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10438935	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10468833	0.85[ASN][1000 genomes]
rs10468904	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10775451	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10853421	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11081761	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs11081763	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs11081764	0.85[ASN][1000 genomes]
rs11081765	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11662168	0.81[CHB][hapmap]
rs11874614	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12604457	0.82[CHB][hapmap]
rs13380944	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs13380968	0.84[ASN][1000 genomes]
rs1380085	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1458858	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1458865	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs16963381	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs17744051	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs17811666	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17811690	0.81[CHB][hapmap]
rs2052757	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2055060	0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs57978863	0.88[ASN][1000 genomes]
rs60451418	0.88[ASN][1000 genomes]
rs60928334	0.85[ASN][1000 genomes]
rs6506968	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7228553	0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7229026	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7243086	0.85[ASN][1000 genomes]
rs7243481	0.85[ASN][1000 genomes]
rs7243539	0.88[ASN][1000 genomes]
rs7245123	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs72933532	0.83[ASN][1000 genomes]
rs72933545	0.85[ASN][1000 genomes]
rs729691	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7359734	0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs8083848	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs8087581	0.82[CHB][hapmap]
rs8087781	0.81[ASN][1000 genomes]
rs8091089	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs8093474	0.82[ASN][1000 genomes]
rs8093807	0.85[ASN][1000 genomes]
rs8094914	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs8096329	0.85[ASN][1000 genomes]
rs968177	0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs968178	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs982521	0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
2	chr18:29996400-30000800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr18:29997800-30002200	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29998200-30002400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
7	chr18:29999000-30001000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr18:29999000-30001800	Enhancers	Colon Smooth Muscle	Colon
9	chr18:29999000-30005600	Enhancers	Brain Hippocampus Middle	brain
10	chr18:29999200-30000600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr18:29999200-30001800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
13	chr18:29999400-30001000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr18:29999400-30005400	Enhancers	Fetal Heart	heart
15	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
16	chr18:29999600-30000600	Enhancers	Liver	Liver
17	chr18:29999600-30000600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr18:29999600-30000800	Enhancers	HUVEC	blood vessel
19	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
20	chr18:29999800-30000600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr18:29999800-30001400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr18:29999800-30001400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr18:29999800-30003600	Enhancers	Adipose Nuclei	Adipose
24	chr18:29999800-30003800	Enhancers	Brain Angular Gyrus	brain
25	chr18:30000000-30001400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr18:30000000-30001400	Enhancers	Fetal Kidney	kidney
27	chr18:30000200-30000600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr18:30000200-30001000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr18:30000200-30001600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr18:30000200-30001800	Enhancers	Left Ventricle	heart
31	chr18:30000400-30000600	Enhancers	Primary hematopoietic stem cells	blood
32	chr18:30000400-30000600	Enhancers	Fetal Lung	lung
33	chr18:30000400-30000600	Enhancers	Lung	lung
34	chr18:30000400-30000600	Enhancers	Ovary	ovary
35	chr18:30000400-30000600	Enhancers	Small Intestine	intestine
36	chr18:30000400-30001000	Enhancers	Fetal Muscle Leg	muscle
37	chr18:30000400-30001400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr18:30000400-30001600	Enhancers	Aorta	Aorta
39	chr18:30000400-30001800	Enhancers	Psoas Muscle	Psoas
40	chr18:30000400-30002400	Enhancers	Right Atrium	heart
41	chr18:30000400-30005600	Enhancers	Fetal Brain Male	brain

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