Variant report

Variant	rs12604457
Chromosome Location	chr18:30027337-30027338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30024614..30027536-chr18:30038908..30041733,2	MCF-7	breast:
2	chr18:30019884..30022192-chr18:30026539..30028590,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10438935	0.84[ASN][1000 genomes]
rs10468833	0.84[ASN][1000 genomes]
rs10468834	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10468904	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10502600	0.84[YRI][hapmap]
rs10775451	0.86[ASN][1000 genomes]
rs10853421	0.84[ASN][1000 genomes]
rs11081763	0.84[ASN][1000 genomes]
rs11081764	0.84[ASN][1000 genomes]
rs11081765	0.84[ASN][1000 genomes]
rs11662168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874614	0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs13380944	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs13380952	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380968	0.85[ASN][1000 genomes]
rs1350551	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380085	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs1458858	0.84[ASN][1000 genomes]
rs1458865	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs16963381	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17744051	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17744064	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744164	0.94[CHB][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811666	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs17811690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811714	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17811798	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863605	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2052757	0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2055060	0.85[ASN][1000 genomes]
rs55941037	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57978863	0.81[ASN][1000 genomes]
rs60928334	0.84[ASN][1000 genomes]
rs61311884	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6506968	0.84[ASN][1000 genomes]
rs7228553	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7229026	0.84[ASN][1000 genomes]
rs7243086	0.84[ASN][1000 genomes]
rs7243481	0.84[ASN][1000 genomes]
rs7243539	0.87[ASN][1000 genomes]
rs7245123	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs72933532	0.82[ASN][1000 genomes]
rs72933545	0.84[ASN][1000 genomes]
rs729691	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs729692	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs729693	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359734	0.84[ASN][1000 genomes]
rs73954814	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8083848	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8087581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087781	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8089997	0.82[CHB][hapmap]
rs8091089	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs8093474	0.81[ASN][1000 genomes]
rs8093807	0.84[ASN][1000 genomes]
rs8094711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094914	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs8096329	0.84[ASN][1000 genomes]
rs968177	0.82[ASN][1000 genomes]
rs968178	0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9807749	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs982521	0.95[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr18:30020000-30032000	Weak transcription	Gastric	stomach
3	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
4	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
5	chr18:30022600-30027800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
7	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
9	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
10	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
11	chr18:30025000-30029200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr18:30025000-30029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
14	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
15	chr18:30025800-30027400	Enhancers	Brain Angular Gyrus	brain
16	chr18:30026000-30028400	Enhancers	Brain Hippocampus Middle	brain
17	chr18:30026200-30027400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr18:30026400-30028200	Weak transcription	Brain Germinal Matrix	brain
19	chr18:30027000-30029600	Weak transcription	Liver	Liver
20	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
22	chr18:30027200-30027800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr18:30027200-30030200	Weak transcription	Brain Anterior Caudate	brain
24	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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