Variant report

Variant	rs13380952
Chromosome Location	chr18:30027101-30027102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30024614..30027536-chr18:30038908..30041733,2	MCF-7	breast:
2	chr18:30019884..30022192-chr18:30026539..30028590,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10468834	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11662168	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12604457	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380944	0.89[ASN][1000 genomes]
rs1350551	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1380085	0.86[ASN][1000 genomes]
rs16963381	0.89[ASN][1000 genomes]
rs17744064	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17744164	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17811690	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17811714	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17811798	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863605	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55941037	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61311884	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs729691	0.86[ASN][1000 genomes]
rs729692	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs729693	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73954814	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8083848	0.89[ASN][1000 genomes]
rs8087581	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8087781	0.89[ASN][1000 genomes]
rs8093474	0.82[ASN][1000 genomes]
rs8094711	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8094914	0.81[ASN][1000 genomes]
rs9807749	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs982521	0.89[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr18:30020000-30032000	Weak transcription	Gastric	stomach
3	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
4	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
5	chr18:30022600-30027800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
7	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
9	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
10	chr18:30024200-30027200	Enhancers	Brain Anterior Caudate	brain
11	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
12	chr18:30025000-30029200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr18:30025000-30029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
15	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
16	chr18:30025800-30027400	Enhancers	Brain Angular Gyrus	brain
17	chr18:30026000-30028400	Enhancers	Brain Hippocampus Middle	brain
18	chr18:30026200-30027400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr18:30026400-30027200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:30026400-30027200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:30026400-30028200	Weak transcription	Brain Germinal Matrix	brain
22	chr18:30026600-30027200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:30026800-30027200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr18:30027000-30027200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr18:30027000-30027200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr18:30027000-30029600	Weak transcription	Liver	Liver
27	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain

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