Variant report

Variant	rs8087781
Chromosome Location	chr18:30023999-30024000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10438935	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10468833	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10468834	0.94[ASN][1000 genomes]
rs10468904	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10775451	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10853421	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081761	0.84[EUR][1000 genomes]
rs11081762	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11081763	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081764	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081765	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11662168	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11874614	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12604457	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13380944	1.00[ASN][1000 genomes]
rs13380952	0.89[ASN][1000 genomes]
rs13380968	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13381344	0.81[EUR][1000 genomes]
rs1350551	0.94[ASN][1000 genomes]
rs1380085	0.96[ASN][1000 genomes]
rs1458858	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1458865	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16963270	0.83[EUR][1000 genomes]
rs16963381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744051	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17744064	0.94[ASN][1000 genomes]
rs17744164	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17811666	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17811690	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17811714	0.94[ASN][1000 genomes]
rs17811798	0.94[ASN][1000 genomes]
rs1863605	0.94[ASN][1000 genomes]
rs1964517	0.82[EUR][1000 genomes]
rs2034968	0.82[EUR][1000 genomes]
rs2052757	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2055060	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2421462	0.87[EUR][1000 genomes]
rs41527551	0.82[EUR][1000 genomes]
rs4561543	0.81[EUR][1000 genomes]
rs4597393	0.82[EUR][1000 genomes]
rs55941037	0.94[ASN][1000 genomes]
rs57978863	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60451418	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60928334	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61311884	0.94[ASN][1000 genomes]
rs6506968	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7228553	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7229026	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7233422	0.82[EUR][1000 genomes]
rs7243086	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243481	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243539	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7245123	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72933532	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72933545	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs729691	0.96[ASN][1000 genomes]
rs729692	0.94[ASN][1000 genomes]
rs729693	0.94[ASN][1000 genomes]
rs7359734	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73954814	0.94[ASN][1000 genomes]
rs8083848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087581	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8091089	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8093474	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8093807	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8094711	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8094914	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8096329	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097263	0.82[EUR][1000 genomes]
rs968177	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs968178	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9807749	0.94[ASN][1000 genomes]
rs982521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30024200	Weak transcription	Pancreas	Pancrea
2	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr18:30020000-30032000	Weak transcription	Gastric	stomach
4	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
5	chr18:30022000-30024200	Weak transcription	Left Ventricle	heart
6	chr18:30022000-30025000	Enhancers	Brain Angular Gyrus	brain
7	chr18:30022000-30025000	Enhancers	Fetal Lung	lung
8	chr18:30022000-30025600	Enhancers	Brain Hippocampus Middle	brain
9	chr18:30022000-30026000	Weak transcription	Brain Germinal Matrix	brain
10	chr18:30022000-30026400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:30022000-30026600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
13	chr18:30022200-30024600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr18:30022400-30026200	Weak transcription	Liver	Liver
15	chr18:30022600-30024200	Enhancers	HSMMtube	muscle
16	chr18:30022600-30026400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr18:30022600-30027800	Enhancers	Brain Cingulate Gyrus	brain
18	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
19	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:30023000-30025400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:30023400-30024000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
22	chr18:30023400-30024200	Enhancers	Right Ventricle	heart
23	chr18:30023400-30024200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
25	chr18:30023600-30024000	Enhancers	Fetal Brain Female	brain
26	chr18:30023600-30024000	Enhancers	Fetal Kidney	kidney
27	chr18:30023600-30024000	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr18:30023600-30024000	Enhancers	NHDF-Ad	bronchial
29	chr18:30023600-30024400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr18:30023600-30026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr18:30023800-30024200	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr18:30023800-30027000	Enhancers	Fetal Brain Male	brain

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