Variant report

Variant	rs60451418
Chromosome Location	chr18:30004014-30004015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29997551..29999648-chr18:30002405..30004452,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10438935	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10468833	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10468834	0.82[ASN][1000 genomes]
rs10468904	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10775451	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10853421	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081761	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081762	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11081763	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081764	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081765	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11665147	0.92[EUR][1000 genomes]
rs11665150	0.92[EUR][1000 genomes]
rs11665190	0.92[EUR][1000 genomes]
rs11874614	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13380944	0.81[ASN][1000 genomes]
rs13380968	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13381344	0.95[EUR][1000 genomes]
rs1350551	0.82[ASN][1000 genomes]
rs1458858	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1458865	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16963270	0.87[EUR][1000 genomes]
rs16963287	0.80[EUR][1000 genomes]
rs16963289	0.92[EUR][1000 genomes]
rs16963381	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17744051	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17744064	0.82[ASN][1000 genomes]
rs17811666	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17811714	0.82[ASN][1000 genomes]
rs17811798	0.82[ASN][1000 genomes]
rs1863605	0.82[ASN][1000 genomes]
rs1964517	0.88[EUR][1000 genomes]
rs2034968	0.88[EUR][1000 genomes]
rs2052757	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2055060	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421462	0.89[EUR][1000 genomes]
rs41527551	0.88[EUR][1000 genomes]
rs4561543	0.83[EUR][1000 genomes]
rs4597393	0.85[EUR][1000 genomes]
rs55941037	0.82[ASN][1000 genomes]
rs56808255	0.93[EUR][1000 genomes]
rs57978863	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60928334	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61311884	0.82[ASN][1000 genomes]
rs6506968	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7228553	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7229026	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7233422	0.84[EUR][1000 genomes]
rs7243086	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7243481	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7243539	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7243964	0.82[EUR][1000 genomes]
rs7245123	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72933532	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72933545	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729692	0.82[ASN][1000 genomes]
rs729693	0.82[ASN][1000 genomes]
rs7359734	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73954814	0.81[ASN][1000 genomes]
rs8083848	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8087781	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8091089	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8093474	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8093807	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8094914	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8096329	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8097263	0.88[EUR][1000 genomes]
rs968099	0.82[EUR][1000 genomes]
rs968177	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs968178	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9807749	0.82[ASN][1000 genomes]
rs982521	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
2	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
3	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
4	chr18:29999000-30005600	Enhancers	Brain Hippocampus Middle	brain
5	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
6	chr18:29999400-30005400	Enhancers	Fetal Heart	heart
7	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
8	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
9	chr18:30000400-30005600	Enhancers	Fetal Brain Male	brain
10	chr18:30000600-30004400	Weak transcription	Liver	Liver
11	chr18:30000600-30004600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr18:30000600-30005400	Weak transcription	Fetal Lung	lung
13	chr18:30000600-30005400	Weak transcription	Ovary	ovary
14	chr18:30000600-30005400	Weak transcription	Small Intestine	intestine
15	chr18:30000800-30004800	Weak transcription	Fetal Stomach	stomach
16	chr18:30000800-30005800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr18:30001400-30004400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:30001400-30004800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
20	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr18:30002200-30006200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr18:30002400-30004800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:30002400-30005000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr18:30002400-30006600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:30002400-30007400	Weak transcription	Left Ventricle	heart
26	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
28	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
29	chr18:30002800-30004400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr18:30003000-30004600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr18:30003200-30004400	Weak transcription	Fetal Muscle Leg	muscle
32	chr18:30003200-30004800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr18:30003400-30004400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr18:30003400-30005400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr18:30003600-30004600	Weak transcription	Adipose Nuclei	Adipose
36	chr18:30003600-30004800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr18:30003800-30004200	Enhancers	Aorta	Aorta
38	chr18:30003800-30004800	Weak transcription	Brain Angular Gyrus	brain
39	chr18:30003800-30005800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr18:30004000-30004400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links