Variant report

Variant	rs982521
Chromosome Location	chr18:30029141-30029142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10438935	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10468833	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10468834	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs10468904	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10775451	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10853421	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081761	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs11081762	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11081763	0.92[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081764	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11081765	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11662168	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11874614	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12604457	0.95[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13380944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13380952	0.89[ASN][1000 genomes]
rs13380968	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13381344	0.85[CEU][hapmap]
rs1350551	0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1380085	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1458858	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1458865	0.93[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16963270	0.81[EUR][1000 genomes]
rs16963381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17744064	0.94[ASN][1000 genomes]
rs17744164	0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17811666	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17811690	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17811714	0.94[ASN][1000 genomes]
rs17811798	0.94[ASN][1000 genomes]
rs1863605	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1964517	0.80[EUR][1000 genomes]
rs2034968	0.80[EUR][1000 genomes]
rs2052757	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2055060	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2421462	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs41527551	0.80[EUR][1000 genomes]
rs4597393	0.81[EUR][1000 genomes]
rs55941037	0.94[ASN][1000 genomes]
rs57978863	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60451418	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60928334	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61311884	0.94[ASN][1000 genomes]
rs6506968	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7228553	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7229026	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243086	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243481	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243539	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7245123	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72933532	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72933545	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs729691	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs729692	0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs729693	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7359734	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73954814	0.94[ASN][1000 genomes]
rs8083848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087581	0.95[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8087781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8089997	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs8091089	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8093474	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8093807	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8094711	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8094914	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8096329	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097263	0.80[EUR][1000 genomes]
rs968177	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs968178	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9807749	0.94[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30020000-30032000	Weak transcription	Gastric	stomach
2	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
3	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
4	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
5	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
7	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
8	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
9	chr18:30025000-30029200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr18:30025000-30029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
12	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
13	chr18:30027000-30029600	Weak transcription	Liver	Liver
14	chr18:30027000-30032200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr18:30027000-30033600	Weak transcription	Fetal Brain Male	brain
16	chr18:30027200-30030200	Weak transcription	Brain Anterior Caudate	brain
17	chr18:30027200-30034000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:30027800-30030400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:30027800-30032400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr18:30028000-30029800	Weak transcription	Brain Angular Gyrus	brain
22	chr18:30028200-30030000	Enhancers	Brain Germinal Matrix	brain
23	chr18:30028400-30031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr18:30028800-30029400	Weak transcription	Fetal Intestine Large	intestine
25	chr18:30028800-30030600	Weak transcription	Small Intestine	intestine
26	chr18:30028800-30030800	Enhancers	Fetal Intestine Small	intestine
27	chr18:30029000-30029200	Enhancers	Brain Hippocampus Middle	brain

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