Variant report

Variant	rs10438935
Chromosome Location	chr18:30005111-30005112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30001420..30003838-chr18:30004077..30007030,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10468833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468834	0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10468904	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10775451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081761	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11081762	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662168	0.84[ASN][1000 genomes]
rs11665147	0.87[EUR][1000 genomes]
rs11665150	0.87[EUR][1000 genomes]
rs11665190	0.87[EUR][1000 genomes]
rs11874614	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12604457	0.84[ASN][1000 genomes]
rs13380944	0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs13380968	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381344	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1350551	0.80[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1380085	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1458858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458865	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16963270	0.84[EUR][1000 genomes]
rs16963287	0.81[YRI][hapmap]
rs16963289	0.87[EUR][1000 genomes]
rs16963381	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17744022	0.82[JPT][hapmap]
rs17744051	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17744064	0.87[ASN][1000 genomes]
rs17744164	0.84[ASN][1000 genomes]
rs17811666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17811690	0.84[ASN][1000 genomes]
rs17811714	0.87[ASN][1000 genomes]
rs17811798	0.87[ASN][1000 genomes]
rs1863605	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1964517	0.83[EUR][1000 genomes]
rs2034968	0.83[EUR][1000 genomes]
rs2052757	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421462	0.92[CEU][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs41527551	0.83[EUR][1000 genomes]
rs55941037	0.87[ASN][1000 genomes]
rs56808255	0.88[EUR][1000 genomes]
rs57978863	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60451418	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60928334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311884	0.87[ASN][1000 genomes]
rs6506968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228553	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243539	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245123	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72933532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72933545	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729691	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs729692	0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs729693	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7359734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954814	0.87[ASN][1000 genomes]
rs8083848	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8087581	0.84[ASN][1000 genomes]
rs8087781	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8089997	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs8091089	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8093474	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8093807	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094711	0.84[ASN][1000 genomes]
rs8094914	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8096329	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097263	0.83[EUR][1000 genomes]
rs968177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs968178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9807749	0.87[ASN][1000 genomes]
rs982521	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
2	chr18:29998800-30005800	Enhancers	Brain Cingulate Gyrus	brain
3	chr18:29998800-30005800	Enhancers	Brain Substantia Nigra	brain
4	chr18:29999000-30005600	Enhancers	Brain Hippocampus Middle	brain
5	chr18:29999200-30005800	Enhancers	Brain Anterior Caudate	brain
6	chr18:29999400-30005400	Enhancers	Fetal Heart	heart
7	chr18:29999400-30007400	Weak transcription	Fetal Intestine Small	intestine
8	chr18:29999600-30007400	Weak transcription	Right Ventricle	heart
9	chr18:30000400-30005600	Enhancers	Fetal Brain Male	brain
10	chr18:30000600-30005400	Weak transcription	Fetal Lung	lung
11	chr18:30000600-30005400	Weak transcription	Ovary	ovary
12	chr18:30000600-30005400	Weak transcription	Small Intestine	intestine
13	chr18:30000800-30005800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
15	chr18:30002000-30008600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:30002200-30006200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr18:30002400-30006600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr18:30002400-30007400	Weak transcription	Left Ventricle	heart
19	chr18:30002400-30014800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
21	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
22	chr18:30003400-30005400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr18:30003800-30005800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr18:30004200-30007400	Weak transcription	Aorta	Aorta
25	chr18:30004400-30005600	Enhancers	Colon Smooth Muscle	Colon
26	chr18:30004400-30005600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr18:30004400-30005800	Enhancers	Liver	Liver
28	chr18:30004400-30005800	Enhancers	Rectal Smooth Muscle	rectum
29	chr18:30004600-30005400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr18:30004600-30005600	Enhancers	Fetal Brain Female	brain
31	chr18:30004600-30005800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr18:30004600-30008600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr18:30004800-30005200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr18:30004800-30005200	Active TSS	Stomach Smooth Muscle	stomach
35	chr18:30004800-30005600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:30004800-30005600	Enhancers	Fetal Stomach	stomach
37	chr18:30004800-30005800	Enhancers	Brain Angular Gyrus	brain
38	chr18:30004800-30005800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr18:30004800-30005800	Enhancers	Osteobl	bone
40	chr18:30004800-30006000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr18:30004800-30006200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr18:30004800-30006800	Enhancers	NH-A	brain
43	chr18:30004800-30008400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr18:30005000-30005600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr18:30005000-30005600	Enhancers	Duodenum Smooth Muscle	Duodenum

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