Variant report

Variant	rs17744022
Chromosome Location	chr18:30016917-30016918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10438935	0.82[JPT][hapmap]
rs10502598	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs10502599	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10775451	0.83[JPT][hapmap]
rs10853421	0.82[JPT][hapmap]
rs11081762	0.83[ASN][1000 genomes]
rs11081763	0.80[JPT][hapmap]
rs11081765	0.83[JPT][hapmap]
rs12052010	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1380086	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1458858	0.83[JPT][hapmap]
rs16959889	0.90[YRI][hapmap]
rs16963339	0.82[CEU][hapmap];0.81[YRI][hapmap]
rs16963367	0.82[CEU][hapmap]
rs16963370	0.82[CEU][hapmap]
rs16963374	0.82[CEU][hapmap]
rs17744182	0.86[JPT][hapmap]
rs17811780	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2055060	0.82[JPT][hapmap]
rs55641647	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506968	0.82[JPT][hapmap]
rs7229026	0.87[JPT][hapmap]
rs72933552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359734	0.82[JPT][hapmap]
rs8091089	0.82[JPT][hapmap]
rs968177	0.83[JPT][hapmap]
rs968178	0.82[JPT][hapmap]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
3	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
4	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
6	chr18:30007600-30017000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:30008600-30017400	Weak transcription	Aorta	Aorta
8	chr18:30010800-30017000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr18:30010800-30018200	Weak transcription	Left Ventricle	heart
10	chr18:30011000-30018400	Weak transcription	Right Ventricle	heart
11	chr18:30011200-30017200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
13	chr18:30014600-30017600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:30014600-30018000	Weak transcription	Small Intestine	intestine
15	chr18:30014800-30017000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:30015000-30018200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:30015000-30018600	Enhancers	Liver	Liver
18	chr18:30015200-30017800	Enhancers	Fetal Intestine Large	intestine
19	chr18:30015600-30017800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr18:30015600-30018200	Enhancers	Fetal Intestine Small	intestine
21	chr18:30015600-30020400	Enhancers	Brain Hippocampus Middle	brain
22	chr18:30015800-30017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:30015800-30021200	Weak transcription	Fetal Lung	lung
24	chr18:30016000-30019400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr18:30016200-30018000	Enhancers	Colon Smooth Muscle	Colon
26	chr18:30016400-30019800	Weak transcription	Adipose Nuclei	Adipose
27	chr18:30016600-30017000	Weak transcription	Stomach Mucosa	stomach
28	chr18:30016600-30017200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr18:30016600-30017600	Enhancers	Brain Anterior Caudate	brain
30	chr18:30016600-30019000	Enhancers	Stomach Smooth Muscle	stomach
31	chr18:30016800-30017400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr18:30016800-30020000	Enhancers	Brain Angular Gyrus	brain
33	chr18:30016800-30020800	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links