Variant report

Variant	rs16963370
Chromosome Location	chr18:30022358-30022359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10502590	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1458860	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16959889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963135	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963196	0.83[EUR][1000 genomes]
rs16963205	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs16963218	0.83[EUR][1000 genomes]
rs16963225	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963230	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963239	0.83[EUR][1000 genomes]
rs16963245	0.83[EUR][1000 genomes]
rs16963272	1.00[JPT][hapmap]
rs16963275	1.00[JPT][hapmap]
rs16963279	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963339	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963374	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744022	0.82[CEU][hapmap]
rs2421455	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35779665	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs57613491	0.83[EUR][1000 genomes]
rs58503085	0.91[EUR][1000 genomes]
rs59676860	0.83[EUR][1000 genomes]
rs60577454	0.86[EUR][1000 genomes]
rs7228337	1.00[JPT][hapmap]
rs7236432	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs72931898	0.91[EUR][1000 genomes]
rs72933507	0.91[EUR][1000 genomes]
rs72933528	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72933534	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085402	0.91[EUR][1000 genomes]
rs902950	1.00[JPT][hapmap]
rs902951	1.00[JPT][hapmap]
rs931494	1.00[JPT][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30023400	Weak transcription	Right Ventricle	heart
2	chr18:30019000-30024200	Weak transcription	Pancreas	Pancrea
3	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr18:30019200-30023400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:30020000-30032000	Weak transcription	Gastric	stomach
6	chr18:30020800-30023600	Weak transcription	Fetal Kidney	kidney
7	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
8	chr18:30021200-30023600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr18:30021400-30022400	Enhancers	Liver	Liver
10	chr18:30021600-30023600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr18:30021800-30022800	Weak transcription	Fetal Heart	heart
12	chr18:30022000-30022400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr18:30022000-30022400	Enhancers	Colon Smooth Muscle	Colon
14	chr18:30022000-30022600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr18:30022000-30022600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:30022000-30022600	Weak transcription	HSMMtube	muscle
17	chr18:30022000-30022800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:30022000-30022800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr18:30022000-30022800	Enhancers	Aorta	Aorta
20	chr18:30022000-30022800	Enhancers	Fetal Brain Male	brain
21	chr18:30022000-30023400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr18:30022000-30023400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr18:30022000-30023400	Weak transcription	HSMM	muscle
24	chr18:30022000-30023600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr18:30022000-30023600	Weak transcription	Fetal Brain Female	brain
26	chr18:30022000-30024200	Weak transcription	Left Ventricle	heart
27	chr18:30022000-30025000	Enhancers	Brain Angular Gyrus	brain
28	chr18:30022000-30025000	Enhancers	Fetal Lung	lung
29	chr18:30022000-30025600	Enhancers	Brain Hippocampus Middle	brain
30	chr18:30022000-30026000	Weak transcription	Brain Germinal Matrix	brain
31	chr18:30022000-30026400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:30022000-30026600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
34	chr18:30022200-30022600	Weak transcription	Psoas Muscle	Psoas
35	chr18:30022200-30022600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr18:30022200-30023000	Weak transcription	Brain Anterior Caudate	brain
37	chr18:30022200-30024600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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