Variant report

Variant	rs16963339
Chromosome Location	chr18:29986488-29986489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10502585	1.00[JPT][hapmap]
rs10502588	1.00[CHB][hapmap]
rs10502589	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10502590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs1458860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16959889	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs16963135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16963169	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs16963196	0.91[EUR][1000 genomes]
rs16963205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963218	0.91[EUR][1000 genomes]
rs16963225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963239	0.91[EUR][1000 genomes]
rs16963245	0.91[EUR][1000 genomes]
rs16963272	1.00[JPT][hapmap]
rs16963275	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16963279	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16963367	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963374	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17744022	0.82[CEU][hapmap];0.81[YRI][hapmap]
rs2421455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35779665	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55642668	0.81[EUR][1000 genomes]
rs57613491	0.91[EUR][1000 genomes]
rs58503085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59676860	0.91[EUR][1000 genomes]
rs60577454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228337	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7236432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7237501	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7240587	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7240755	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs72931898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72933528	0.91[EUR][1000 genomes]
rs72933534	0.91[EUR][1000 genomes]
rs73956895	0.81[EUR][1000 genomes]
rs73958411	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8085402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs902951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs931494	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347612	chr18:29975003-29990362	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
2	chr18:29967000-29986600	Weak transcription	Brain Angular Gyrus	brain
3	chr18:29981800-29986800	Weak transcription	Adipose Nuclei	Adipose
4	chr18:29982000-30005400	Weak transcription	Stomach Mucosa	stomach
5	chr18:29982600-29987000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:29982600-29987200	Weak transcription	Fetal Heart	heart
7	chr18:29982800-29987000	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:29982800-29987000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:29983000-29987200	Weak transcription	Ovary	ovary
10	chr18:29983800-29987000	Weak transcription	Gastric	stomach
11	chr18:29983800-29987600	Weak transcription	Brain Anterior Caudate	brain
12	chr18:29985400-29995200	Weak transcription	Pancreas	Pancrea
13	chr18:29985800-29987000	Weak transcription	Left Ventricle	heart
14	chr18:29985800-29987200	Weak transcription	Psoas Muscle	Psoas
15	chr18:29985800-29987600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr18:29985800-29987600	Enhancers	Brain Substantia Nigra	brain
17	chr18:29986000-29988400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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