Variant report

Variant	rs16963367
Chromosome Location	chr18:30021436-30021437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30019884..30022192-chr18:30026539..30028590,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10502590	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1458860	1.00[JPT][hapmap]
rs16959889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs16963135	1.00[JPT][hapmap]
rs16963196	0.83[EUR][1000 genomes]
rs16963205	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963218	0.83[EUR][1000 genomes]
rs16963225	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963230	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963239	0.83[EUR][1000 genomes]
rs16963245	0.83[EUR][1000 genomes]
rs16963272	1.00[JPT][hapmap]
rs16963275	1.00[JPT][hapmap]
rs16963279	1.00[JPT][hapmap]
rs16963339	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744022	0.82[CEU][hapmap]
rs2421455	1.00[JPT][hapmap]
rs35779665	1.00[JPT][hapmap]
rs57613491	0.83[EUR][1000 genomes]
rs58503085	0.91[EUR][1000 genomes]
rs59676860	0.83[EUR][1000 genomes]
rs60577454	0.86[EUR][1000 genomes]
rs7228337	1.00[JPT][hapmap]
rs7236432	1.00[JPT][hapmap]
rs72931898	0.91[EUR][1000 genomes]
rs72933507	0.91[EUR][1000 genomes]
rs72933528	1.00[EUR][1000 genomes]
rs72933534	1.00[EUR][1000 genomes]
rs8085402	0.91[EUR][1000 genomes]
rs902950	1.00[JPT][hapmap]
rs902951	1.00[JPT][hapmap]
rs931494	1.00[JPT][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
2	chr18:30017000-30021600	Enhancers	Fetal Brain Male	brain
3	chr18:30017600-30021600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr18:30018200-30021800	Weak transcription	Fetal Intestine Small	intestine
5	chr18:30018600-30021600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr18:30019000-30023400	Weak transcription	Right Ventricle	heart
7	chr18:30019000-30024200	Weak transcription	Pancreas	Pancrea
8	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr18:30019200-30023400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr18:30019400-30021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:30020000-30032000	Weak transcription	Gastric	stomach
12	chr18:30020200-30021600	Weak transcription	Adipose Nuclei	Adipose
13	chr18:30020600-30022000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:30020800-30021600	Weak transcription	Left Ventricle	heart
15	chr18:30020800-30023600	Weak transcription	Fetal Kidney	kidney
16	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
17	chr18:30021200-30022000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr18:30021200-30022000	Enhancers	Fetal Muscle Leg	muscle
19	chr18:30021200-30022000	Active TSS	Right Atrium	heart
20	chr18:30021200-30023600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr18:30021400-30021600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:30021400-30021600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr18:30021400-30021600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr18:30021400-30021600	Active TSS	Fetal Brain Female	brain
25	chr18:30021400-30021600	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr18:30021400-30021600	Flanking Active TSS	Fetal Lung	lung
27	chr18:30021400-30021600	Active TSS	Ovary	ovary
28	chr18:30021400-30021800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr18:30021400-30021800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr18:30021400-30021800	Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr18:30021400-30021800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:30021400-30021800	Active TSS	Aorta	Aorta
33	chr18:30021400-30021800	Active TSS	Brain Angular Gyrus	brain
34	chr18:30021400-30021800	Flanking Active TSS	Brain Germinal Matrix	brain
35	chr18:30021400-30021800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:30021400-30021800	Active TSS	Brain Substantia Nigra	brain
37	chr18:30021400-30021800	Active TSS	Stomach Smooth Muscle	stomach
38	chr18:30021400-30021800	Flanking Active TSS	HSMMtube	muscle
39	chr18:30021400-30021800	Flanking Active TSS	NH-A	brain
40	chr18:30021400-30022000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr18:30021400-30022000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr18:30021400-30022000	Active TSS	Brain Anterior Caudate	brain
43	chr18:30021400-30022000	Active TSS	Brain Cingulate Gyrus	brain
44	chr18:30021400-30022000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr18:30021400-30022000	Active TSS	Colon Smooth Muscle	Colon
46	chr18:30021400-30022000	Enhancers	HSMM	muscle
47	chr18:30021400-30022200	Enhancers	Psoas Muscle	Psoas
48	chr18:30021400-30022400	Enhancers	Liver	Liver

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