Variant report

Variant	rs16963374
Chromosome Location	chr18:30026947-30026948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30024614..30027536-chr18:30038908..30041733,2	MCF-7	breast:
2	chr18:30019884..30022192-chr18:30026539..30028590,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10502590	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1458860	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16959889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16963135	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963196	0.83[EUR][1000 genomes]
rs16963205	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963218	0.83[EUR][1000 genomes]
rs16963225	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963230	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963239	0.83[EUR][1000 genomes]
rs16963245	0.83[EUR][1000 genomes]
rs16963272	1.00[JPT][hapmap]
rs16963275	1.00[JPT][hapmap]
rs16963279	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963339	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16963367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963370	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744022	0.82[CEU][hapmap]
rs2421455	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35779665	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs57613491	0.83[EUR][1000 genomes]
rs58503085	0.91[EUR][1000 genomes]
rs59676860	0.83[EUR][1000 genomes]
rs60577454	0.86[EUR][1000 genomes]
rs7228337	1.00[JPT][hapmap]
rs7236432	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs72931898	0.91[EUR][1000 genomes]
rs72933507	0.91[EUR][1000 genomes]
rs72933528	1.00[EUR][1000 genomes]
rs72933534	1.00[EUR][1000 genomes]
rs8085402	0.91[EUR][1000 genomes]
rs902950	1.00[JPT][hapmap]
rs902951	1.00[JPT][hapmap]
rs931494	1.00[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30019000-30028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr18:30020000-30032000	Weak transcription	Gastric	stomach
3	chr18:30020800-30030600	Weak transcription	Stomach Mucosa	stomach
4	chr18:30022000-30029200	Enhancers	Brain Substantia Nigra	brain
5	chr18:30022600-30027800	Enhancers	Brain Cingulate Gyrus	brain
6	chr18:30022800-30030600	Weak transcription	Psoas Muscle	Psoas
7	chr18:30022800-30035400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:30023400-30033000	Enhancers	Fetal Heart	heart
9	chr18:30023800-30027000	Enhancers	Fetal Brain Male	brain
10	chr18:30024000-30035200	Weak transcription	Fetal Brain Female	brain
11	chr18:30024200-30027200	Enhancers	Brain Anterior Caudate	brain
12	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
13	chr18:30025000-30029200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr18:30025000-30029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
16	chr18:30025200-30030600	Weak transcription	Pancreas	Pancrea
17	chr18:30025800-30027400	Enhancers	Brain Angular Gyrus	brain
18	chr18:30026000-30028400	Enhancers	Brain Hippocampus Middle	brain
19	chr18:30026200-30027000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:30026200-30027000	Enhancers	Liver	Liver
21	chr18:30026200-30027400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr18:30026400-30027200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:30026400-30027200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr18:30026400-30028200	Weak transcription	Brain Germinal Matrix	brain
25	chr18:30026600-30027200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:30026800-30027000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr18:30026800-30027000	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr18:30026800-30027200	Enhancers	HUES64 Cell Line	embryonic stem cell

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