Variant report

Variant	rs16959889
Chromosome Location	chr18:30015464-30015465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30010280..30012190-chr18:30014297..30016244,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10502590	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1458860	1.00[JPT][hapmap]
rs16963135	1.00[JPT][hapmap]
rs16963196	0.83[EUR][1000 genomes]
rs16963205	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963218	0.83[EUR][1000 genomes]
rs16963225	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963230	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16963239	0.83[EUR][1000 genomes]
rs16963245	0.83[EUR][1000 genomes]
rs16963272	1.00[JPT][hapmap]
rs16963275	1.00[JPT][hapmap]
rs16963279	1.00[JPT][hapmap]
rs16963339	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs16963367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs16963370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17744022	0.90[YRI][hapmap]
rs2421455	1.00[JPT][hapmap]
rs35779665	1.00[JPT][hapmap]
rs57613491	0.83[EUR][1000 genomes]
rs58503085	0.91[EUR][1000 genomes]
rs59676860	0.83[EUR][1000 genomes]
rs60577454	0.86[EUR][1000 genomes]
rs7228337	1.00[JPT][hapmap]
rs7236432	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs72931898	0.91[EUR][1000 genomes]
rs72933507	0.91[EUR][1000 genomes]
rs72933528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933552	0.81[AFR][1000 genomes]
rs8085402	0.91[EUR][1000 genomes]
rs902950	1.00[JPT][hapmap]
rs902951	1.00[JPT][hapmap]
rs931494	1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30001400-30018400	Weak transcription	Esophagus	oesophagus
2	chr18:30002400-30017200	Weak transcription	Right Atrium	heart
3	chr18:30002400-30018200	Weak transcription	Psoas Muscle	Psoas
4	chr18:30005200-30018200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr18:30006200-30018200	Weak transcription	Pancreas	Pancrea
6	chr18:30006400-30016800	Weak transcription	Brain Angular Gyrus	brain
7	chr18:30007600-30017000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr18:30008600-30017400	Weak transcription	Aorta	Aorta
9	chr18:30010200-30015600	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:30010800-30017000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr18:30010800-30018200	Weak transcription	Left Ventricle	heart
12	chr18:30011000-30018400	Weak transcription	Right Ventricle	heart
13	chr18:30011200-30017200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:30012800-30021800	Enhancers	Fetal Heart	heart
15	chr18:30014600-30016600	Enhancers	Stomach Mucosa	stomach
16	chr18:30014600-30017600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:30014600-30018000	Weak transcription	Small Intestine	intestine
18	chr18:30014800-30016000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:30014800-30017000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr18:30015000-30018200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr18:30015000-30018600	Enhancers	Liver	Liver
22	chr18:30015200-30017800	Enhancers	Fetal Intestine Large	intestine
23	chr18:30015400-30016400	Enhancers	HepG2	liver
24	chr18:30015400-30016800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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