Variant report

Variant	rs16963135
Chromosome Location	chr18:29918072-29918073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29912040..29915183-chr18:29916652..29919648,4	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10502585	1.00[JPT][hapmap]
rs10502588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs10502589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10502590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1458860	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap]
rs16959889	1.00[JPT][hapmap]
rs16963169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16963196	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16963218	0.90[EUR][1000 genomes]
rs16963225	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16963230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16963239	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16963245	0.90[EUR][1000 genomes]
rs16963272	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16963275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs16963279	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs16963339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16963367	1.00[JPT][hapmap]
rs16963370	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16963374	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2421455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs35779665	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs55642668	1.00[EUR][1000 genomes]
rs57613491	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58503085	0.81[EUR][1000 genomes]
rs59676860	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7236432	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7237501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7240587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7240755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs72931898	0.81[EUR][1000 genomes]
rs72933507	0.81[EUR][1000 genomes]
rs73956895	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73958411	0.81[EUR][1000 genomes]
rs8085402	0.81[EUR][1000 genomes]
rs902950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs902951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs931494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
4	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
5	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:29906800-29922200	Weak transcription	Ovary	ovary
9	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
10	chr18:29907800-29921800	Weak transcription	Liver	Liver
11	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:29912000-29918600	Weak transcription	Small Intestine	intestine
13	chr18:29912800-29923800	Weak transcription	Lung	lung
14	chr18:29913400-29918800	Weak transcription	Psoas Muscle	Psoas
15	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
16	chr18:29914000-29923400	Weak transcription	Right Ventricle	heart
17	chr18:29914200-29918800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr18:29915000-29923400	Weak transcription	Fetal Muscle Leg	muscle
19	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr18:29916000-29918600	Weak transcription	Left Ventricle	heart
21	chr18:29916000-29921800	Weak transcription	Pancreas	Pancrea
22	chr18:29916000-29923800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr18:29916000-29924000	Weak transcription	Brain Anterior Caudate	brain
24	chr18:29916000-29925000	Weak transcription	Brain Angular Gyrus	brain
25	chr18:29916000-29925000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:29917400-29918200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr18:29917600-29918200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr18:29917600-29918400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr18:29917600-29920000	Enhancers	Stomach Mucosa	stomach
30	chr18:29917600-29920200	Enhancers	Fetal Heart	heart
31	chr18:29917800-29918200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr18:29917800-29918800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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