Variant report

Variant	rs55642668
Chromosome Location	chr18:29918995-29918996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29912040..29915183-chr18:29916652..29919648,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502588	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502589	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502590	0.90[EUR][1000 genomes]
rs16963135	1.00[EUR][1000 genomes]
rs16963169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963196	0.90[EUR][1000 genomes]
rs16963205	0.90[EUR][1000 genomes]
rs16963218	0.90[EUR][1000 genomes]
rs16963225	0.90[EUR][1000 genomes]
rs16963230	0.90[EUR][1000 genomes]
rs16963239	0.90[EUR][1000 genomes]
rs16963245	0.90[EUR][1000 genomes]
rs16963339	0.81[EUR][1000 genomes]
rs56945883	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs57613491	0.90[EUR][1000 genomes]
rs58503085	0.81[EUR][1000 genomes]
rs59676860	0.90[EUR][1000 genomes]
rs7228337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236432	1.00[EUR][1000 genomes]
rs7237501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7240587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7240755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931898	0.81[EUR][1000 genomes]
rs72933507	0.81[EUR][1000 genomes]
rs73956883	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73956895	1.00[EUR][1000 genomes]
rs73958411	0.81[EUR][1000 genomes]
rs8085402	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
3	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
4	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:29906800-29922200	Weak transcription	Ovary	ovary
7	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
8	chr18:29907800-29921800	Weak transcription	Liver	Liver
9	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr18:29912800-29923800	Weak transcription	Lung	lung
11	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
12	chr18:29914000-29923400	Weak transcription	Right Ventricle	heart
13	chr18:29915000-29923400	Weak transcription	Fetal Muscle Leg	muscle
14	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr18:29916000-29921800	Weak transcription	Pancreas	Pancrea
16	chr18:29916000-29923800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr18:29916000-29924000	Weak transcription	Brain Anterior Caudate	brain
18	chr18:29916000-29925000	Weak transcription	Brain Angular Gyrus	brain
19	chr18:29916000-29925000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:29917600-29920000	Enhancers	Stomach Mucosa	stomach
21	chr18:29917600-29920200	Enhancers	Fetal Heart	heart
22	chr18:29918400-29920200	Enhancers	Duodenum Mucosa	Duodenum
23	chr18:29918600-29920000	Enhancers	Fetal Intestine Small	intestine
24	chr18:29918600-29920000	Enhancers	Left Ventricle	heart
25	chr18:29918800-29919400	Enhancers	Fetal Intestine Large	intestine
26	chr18:29918800-29919400	Enhancers	Psoas Muscle	Psoas
27	chr18:29918800-29919400	Weak transcription	Small Intestine	intestine
28	chr18:29918800-29919400	Enhancers	Stomach Smooth Muscle	stomach

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