Variant report

Variant	rs10502592
Chromosome Location	chr18:29964730-29964731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29962611..29966946-chr18:30048395..30051891,4	MCF-7	breast:
2	chr18:29960482..29963119-chr18:29963659..29966463,2	MCF-7	breast:
3	chr18:29952934..29954642-chr18:29963321..29966112,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11665147	0.91[CEU][hapmap]
rs11665150	0.91[CEU][hapmap]
rs11665190	0.91[CEU][hapmap]
rs11876773	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1458860	0.83[YRI][hapmap]
rs16963285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16963289	0.91[CEU][hapmap]
rs1824304	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2034968	0.91[CEU][hapmap]
rs41527551	0.91[CEU][hapmap]
rs59456493	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs616601	0.88[CHB][hapmap]
rs618004	0.88[CHB][hapmap]
rs625361	0.88[CHB][hapmap]
rs638142	0.88[CHB][hapmap]
rs656946	0.88[CHB][hapmap]
rs657479	0.88[CHB][hapmap]
rs668857	0.88[CHB][hapmap]
rs681347	0.88[CHB][hapmap]
rs7230250	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs736218	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73958410	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8097263	0.91[CEU][hapmap]
rs968099	0.81[CEU][hapmap]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29950000-29966200	Weak transcription	Fetal Brain Female	brain
2	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
3	chr18:29953000-29966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:29953400-29966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
6	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
7	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
8	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
10	chr18:29955400-29965400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr18:29958000-29965600	Weak transcription	Right Ventricle	heart
13	chr18:29958800-29965200	Weak transcription	Fetal Brain Male	brain
14	chr18:29959000-29966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr18:29960600-29966200	Enhancers	Stomach Mucosa	stomach
18	chr18:29960800-29969800	Weak transcription	Small Intestine	intestine
19	chr18:29962000-29965600	Enhancers	HUVEC	blood vessel
20	chr18:29962800-29965400	Weak transcription	Esophagus	oesophagus
21	chr18:29962800-29972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:29962800-29972800	Weak transcription	Gastric	stomach
23	chr18:29962800-29974000	Weak transcription	Left Ventricle	heart
24	chr18:29963000-29964800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr18:29963000-29967000	Enhancers	Fetal Heart	heart
26	chr18:29963200-29966200	Weak transcription	Brain Substantia Nigra	brain
27	chr18:29963400-29965200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr18:29963400-29965400	Weak transcription	Brain Hippocampus Middle	brain
29	chr18:29963400-29966000	Weak transcription	Brain Anterior Caudate	brain
30	chr18:29963400-29966200	Weak transcription	Brain Angular Gyrus	brain
31	chr18:29963400-29969800	Weak transcription	Pancreas	Pancrea
32	chr18:29963600-29966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr18:29963600-29971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr18:29963600-29976200	Weak transcription	Aorta	Aorta
35	chr18:29963600-29999200	Weak transcription	Fetal Kidney	kidney
36	chr18:29963800-29965600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr18:29963800-29971200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr18:29964000-29965800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr18:29964200-29965600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr18:29964200-29965600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr18:29964200-29966200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr18:29964200-29974000	Weak transcription	Ovary	ovary
43	chr18:29964400-29965400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr18:29964400-29966200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr18:29964600-29964800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr18:29964600-29965800	Enhancers	Adipose Nuclei	Adipose

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