Variant report

Variant	rs59456493
Chromosome Location	chr18:29961419-29961420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29955010..29956616-chr18:29960394..29962375,2	MCF-7	breast:
2	chr18:29960482..29963119-chr18:29963659..29966463,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10502592	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11876773	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963285	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73958410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29950000-29966200	Weak transcription	Fetal Brain Female	brain
2	chr18:29951800-29961800	Weak transcription	Esophagus	oesophagus
3	chr18:29952800-29963600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:29952800-29964600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
6	chr18:29953000-29966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr18:29953400-29966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
9	chr18:29954200-29961800	Weak transcription	Gastric	stomach
10	chr18:29954200-29963200	Weak transcription	HSMM	muscle
11	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
12	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
13	chr18:29954400-29961600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:29954400-29961800	Weak transcription	Aorta	Aorta
15	chr18:29954400-29962000	Weak transcription	HUVEC	blood vessel
16	chr18:29954400-29962400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:29954400-29962800	Weak transcription	Brain Anterior Caudate	brain
18	chr18:29954400-29963000	Weak transcription	Fetal Kidney	kidney
19	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr18:29954600-29961600	Weak transcription	NHEK	skin
21	chr18:29954600-29961800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:29954600-29962600	Weak transcription	Brain Angular Gyrus	brain
23	chr18:29954600-29962600	Weak transcription	Brain Hippocampus Middle	brain
24	chr18:29954600-29963000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
26	chr18:29955400-29965400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr18:29958000-29965600	Weak transcription	Right Ventricle	heart
29	chr18:29958200-29962200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr18:29958800-29965200	Weak transcription	Fetal Brain Male	brain
31	chr18:29959000-29962200	Weak transcription	Brain Substantia Nigra	brain
32	chr18:29959000-29962200	Weak transcription	NH-A	brain
33	chr18:29959000-29962400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr18:29959000-29963000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr18:29959000-29966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr18:29959200-29961800	Weak transcription	Ovary	ovary
37	chr18:29959200-29961800	Weak transcription	HMEC	breast
38	chr18:29959200-29962200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr18:29959200-29962200	Weak transcription	Hela-S3	cervix
40	chr18:29959200-29962200	Weak transcription	HepG2	liver
41	chr18:29959200-29962400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr18:29959200-29962600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr18:29959200-29962600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr18:29959200-29962600	Weak transcription	Osteobl	bone
45	chr18:29959200-29962800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr18:29959200-29964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr18:29959400-29961600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr18:29959400-29962000	Weak transcription	Adipose Nuclei	Adipose

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