Variant report

Variant	rs677721
Chromosome Location	chr18:29910144-29910145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29899850..29902793-chr18:29909603..29911236,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1689030	0.80[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs594344	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs595792	0.80[CEU][hapmap]
rs598074	0.93[EUR][1000 genomes]
rs606638	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616601	0.86[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618004	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs619154	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs625361	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638142	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638868	0.83[YRI][hapmap]
rs643836	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs644274	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656946	0.86[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657479	0.83[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs668857	0.86[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671090	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs681347	0.87[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs686196	0.82[YRI][hapmap]
rs687850	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8084215	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29891000-29914000	Weak transcription	Fetal Brain Female	brain
3	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
5	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
6	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
8	chr18:29898200-29915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr18:29903400-29915800	Weak transcription	Fetal Brain Male	brain
10	chr18:29904200-29913200	Weak transcription	Pancreas	Pancrea
11	chr18:29904200-29913800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr18:29904200-29915200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:29904600-29917200	Weak transcription	HMEC	breast
15	chr18:29906800-29912600	Weak transcription	Psoas Muscle	Psoas
16	chr18:29906800-29915200	Weak transcription	Adipose Nuclei	Adipose
17	chr18:29906800-29917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:29906800-29922200	Weak transcription	Ovary	ovary
19	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
20	chr18:29907000-29911600	Weak transcription	Fetal Heart	heart
21	chr18:29907000-29911800	Weak transcription	Right Ventricle	heart
22	chr18:29907000-29913400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr18:29907000-29914400	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:29907000-29914600	Weak transcription	Fetal Kidney	kidney
25	chr18:29907600-29912200	Weak transcription	Brain Hippocampus Middle	brain
26	chr18:29907800-29911800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr18:29907800-29911800	Weak transcription	Brain Substantia Nigra	brain
28	chr18:29907800-29914800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr18:29907800-29921800	Weak transcription	Liver	Liver
30	chr18:29908000-29914000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr18:29908600-29912800	Weak transcription	Brain Angular Gyrus	brain
32	chr18:29908800-29913600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:29909000-29914800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr18:29909000-29917800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr18:29909200-29911800	Weak transcription	Left Ventricle	heart
36	chr18:29909200-29913800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr18:29909200-29917600	Weak transcription	Stomach Mucosa	stomach

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