Variant report

Variant	rs1187789
Chromosome Location	chr1:213467419-213467420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1187788	0.84[AFR][1000 genomes]
rs1187794	0.91[AFR][1000 genomes]
rs1187797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1187804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2841420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2841423	0.84[AFR][1000 genomes]
rs4256785	1.00[AMR][1000 genomes]
rs4295858	1.00[AMR][1000 genomes]
rs4411110	1.00[AMR][1000 genomes]
rs7530520	1.00[AMR][1000 genomes]
rs9430119	1.00[AMR][1000 genomes]
rs971184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:213466400-213469200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:213466600-213476400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:213467000-213476200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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