Variant report

Variant rs11878398
Chromosome Location chr19:37999331-37999332
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:37996400-37999400 Active TSS HUES48 Cell Line embryonic stem cell
2 chr19:37996400-37999400 Active TSS HUES6 Cell Line embryonic stem cell
3 chr19:37996600-37999400 Active TSS ES-I3 Cell Line embryonic stem cell
4 chr19:37997000-37999400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr19:37998000-37999600 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr19:37998400-37999400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr19:37998400-38004800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr19:37998600-37999800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr19:37998600-38000400 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr19:37998600-38000400 Weak transcription Left Ventricle heart
11 chr19:37998600-38001400 Weak transcription Colonic Mucosa Colon
12 chr19:37998600-38002400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr19:37998600-38002600 Weak transcription Spleen Spleen
14 chr19:37998600-38003200 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr19:37998600-38003800 Weak transcription Placenta Placenta
16 chr19:37998600-38004200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr19:37998600-38004800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr19:37998600-38005200 Weak transcription Psoas Muscle Psoas
19 chr19:37998600-38008400 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr19:37998800-37999400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr19:37998800-37999600 Enhancers Fetal Brain Male brain
22 chr19:37998800-37999800 Weak transcription Primary hematopoietic stem cells blood
23 chr19:37998800-37999800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr19:37998800-38000000 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr19:37998800-38000000 Weak transcription Ovary ovary
26 chr19:37998800-38000400 Weak transcription Fetal Muscle Trunk muscle
27 chr19:37998800-38000600 Weak transcription Fetal Stomach stomach
28 chr19:37998800-38000800 Weak transcription Fetal Intestine Large intestine
29 chr19:37998800-38001200 Weak transcription Primary T cells fromperipheralblood blood
30 chr19:37998800-38002000 Weak transcription Duodenum Mucosa Duodenum
31 chr19:37998800-38002000 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr19:37998800-38002200 Weak transcription Primary B cells from peripheral blood blood
33 chr19:37998800-38002200 Weak transcription Aorta Aorta
34 chr19:37998800-38002200 Weak transcription Pancreas Pancrea
35 chr19:37998800-38002400 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr19:37998800-38002600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr19:37998800-38003800 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr19:37998800-38006200 Weak transcription Esophagus oesophagus
39 chr19:37998800-38010800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr19:37998800-38014000 Weak transcription Muscle Satellite Cultured Cells --
41 chr19:37998800-38021000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr19:37998800-38022600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr19:37999000-37999400 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
44 chr19:37999000-37999400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr19:37999000-37999800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr19:37999000-38000000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr19:37999000-38000200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr19:37999000-38000600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr19:37999000-38000600 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr19:37999000-38001400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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