Variant report

Variant	rs11880673
Chromosome Location	chr19:18388421-18388422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:224)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:224 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr19:18388280-18388589	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr19:18388139-18388565	HL-60	blood:	n/a	n/a
3	CTCF	chr19:18388360-18388510	GM12869	blood:	n/a	n/a
4	CTCF	chr19:18388360-18388510	HCM	heart:	n/a	n/a
5	CTCF	chr19:18388339-18388502	HUVEC	blood vessel:	n/a	n/a
6	CTCF	chr19:18388302-18388529	MCF-7	breast:	n/a	n/a
7	POLR2A	chr19:18382150-18392613	HepG2	liver:	n/a	n/a
8	CTCF	chr19:18388340-18388490	HEEpiC	esophagus:	n/a	n/a
9	RAD21	chr19:18388247-18388565	H1-hESC	embryonic stem cell:	n/a	n/a
10	ZMIZ1	chr19:18388299-18388473	K562	blood:	n/a	n/a
11	POLR2A	chr19:18388084-18394020	GM12891	blood:	n/a	n/a
12	CTCF	chr19:18388340-18388490	AG04449	skin:	n/a	n/a
13	CTCF	chr19:18388320-18388470	GM12864	blood:	n/a	n/a
14	RAD21	chr19:18388272-18388551	HepG2	liver:	n/a	n/a
15	CTCF	chr19:18388360-18388510	NHLF	lung:	n/a	n/a
16	HEY1	chr19:18388178-18388556	HepG2	liver:	n/a	n/a
17	RAD21	chr19:18388303-18388589	A549	lung:	n/a	n/a
18	CTCF	chr19:18388340-18388490	NHDF-neo	bronchial:	n/a	n/a
19	RAD21	chr19:18388252-18388563	HCT-116	colon:	n/a	n/a
20	CTCF	chr19:18388360-18388510	WERI-Rb-1	eye:	n/a	n/a
21	CTCF	chr19:18388283-18388502	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr19:18388340-18388490	GM12867	blood:	n/a	n/a
23	RAD21	chr19:18388273-18388551	HepG2	liver:	n/a	n/a
24	POLR2A	chr19:18385002-18394564	K562	blood:	n/a	n/a
25	JUND	chr19:18388376-18388531	HepG2	liver:	n/a	n/a
26	HEY1	chr19:18388175-18388619	K562	blood:	n/a	n/a
27	POLR2A	chr19:18382160-18394577	MCF10A-Er-Src	breast:	n/a	n/a
28	POLR2A	chr19:18388260-18388499	GM12878	blood:	n/a	n/a
29	CTCF	chr19:18388260-18388599	K562	blood:	n/a	n/a
30	CTCF	chr19:18388360-18388510	BE2_C	brain:	n/a	n/a
31	CTCF	chr19:18388340-18388490	AG04450	lung:	n/a	n/a
32	CTCF	chr19:18388354-18388526	MCF-7	breast:	n/a	n/a
33	CTCF	chr19:18388375-18388481	Spleen_OC	spleen:	n/a	n/a
34	POLR2A	chr19:18388084-18392768	GM12891	blood:	n/a	n/a
35	SMC3	chr19:18388300-18388497	GM12878	blood:	n/a	n/a
36	CTCF	chr19:18388360-18388510	HRPEpiC	eye:	n/a	n/a
37	POLR2A	chr19:18388222-18388552	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr19:18388340-18388490	HAc	cerebellar:	n/a	n/a
39	POLR2A	chr19:18388095-18388567	GM12892	blood:	n/a	n/a
40	CTCF	chr19:18388340-18388490	GM12871	blood:	n/a	n/a
41	POLR2A	chr19:18388194-18388632	PANC-1	pancreas:	n/a	n/a
42	HDAC2	chr19:18388364-18388553	K562	blood:	n/a	n/a
43	RAD21	chr19:18388282-18388500	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr19:18388377-18388488	GM13977	blood:	n/a	n/a
45	POLR2A	chr19:18382204-18393752	HUVEC	blood vessel:	n/a	n/a
46	CTCF	chr19:18388363-18388497	GM19240	blood:	n/a	n/a
47	CTCF	chr19:18388320-18388470	HEEpiC	esophagus:	n/a	n/a
48	POLR2A	chr19:18384125-18394577	Hela-S3	cervix:	n/a	n/a
49	POLR2A	chr19:18388124-18388623	GM12891	blood:	n/a	n/a
50	CTCF	chr19:18388320-18388470	GM12866	blood:	n/a	n/a

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18385043..18394940-chr19:18518893..18533267,53	K562	blood:
2	chr19:18387480..18389163-chr19:18512842..18514598,2	K562	blood:
3	chr19:18303093..18307365-chr19:18386584..18393500,10	K562	blood:
4	chr19:18387502..18390021-chr9:123629758..123632738,2	K562	blood:
5	chr19:18313659..18316582-chr19:18386529..18393683,9	K562	blood:
6	chr19:18260692..18269532-chr19:18383927..18395911,19	K562	blood:
7	chr19:18387676..18394124-chr19:18495437..18503905,30	K562	blood:
8	chr19:18283857..18287210-chr19:18388230..18390509,3	K562	blood:
9	chr19:18343280..18346156-chr19:18388321..18390224,2	K562	blood:
10	chr19:18384108..18395354-chr19:18534355..18544725,18	K562	blood:
11	chr19:18382564..18395263-chr19:18409643..18446343,165	MCF-7	breast:
12	chr19:18302787..18307396-chr19:18383842..18390051,8	K562	blood:
13	chr19:18232174..18234032-chr19:18387928..18389889,2	K562	blood:
14	chr19:18388413..18390013-chr19:18483305..18484834,2	MCF-7	breast:
15	chr19:18387676..18394344-chr19:18495021..18501696,25	K562	blood:
16	chr19:18383365..18408325-chr19:18518460..18533256,66	K562	blood:
17	chr19:18386246..18388460-chr6:43139240..43141141,2	K562	blood:
18	chr19:18387663..18390272-chr19:18513098..18515988,2	K562	blood:

No data

Variant related genes	Relation type
MIR3188	TF binding region
KIAA1683	TF binding region
ENSG00000254858	Chromatin interaction
ENSG00000269145	Chromatin interaction
ENSG00000105649	Chromatin interaction
ENSG00000221167	Chromatin interaction
ENSG00000130520	Chromatin interaction
ENSG00000112658	Chromatin interaction
ENSG00000105650	Chromatin interaction
ENSG00000239821	Chromatin interaction
ENSG00000268173	Chromatin interaction
ENSG00000130511	Chromatin interaction
ENSG00000216490	Chromatin interaction
ENSG00000130513	Chromatin interaction
ENSG00000105647	Chromatin interaction
ENSG00000268650	Chromatin interaction
ENSG00000119403	Chromatin interaction
ENSG00000264175	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10409185	1.00[EUR][1000 genomes]
rs10410957	1.00[EUR][1000 genomes]
rs10415054	1.00[EUR][1000 genomes]
rs10418124	1.00[EUR][1000 genomes]
rs10451485	1.00[EUR][1000 genomes]
rs11881620	1.00[EUR][1000 genomes]
rs17882031	1.00[EUR][1000 genomes]
rs28489988	1.00[EUR][1000 genomes]
rs28537851	1.00[EUR][1000 genomes]
rs28706490	1.00[EUR][1000 genomes]
rs28819668	1.00[EUR][1000 genomes]
rs57757608	1.00[EUR][1000 genomes]
rs58749284	1.00[EUR][1000 genomes]
rs60235938	0.83[AFR][1000 genomes]
rs6512246	1.00[EUR][1000 genomes]
rs7254443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7256004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73005418	0.84[AFR][1000 genomes]
rs73523060	1.00[EUR][1000 genomes]
rs73523064	1.00[EUR][1000 genomes]
rs73523067	1.00[EUR][1000 genomes]
rs73523088	1.00[EUR][1000 genomes]
rs73525104	1.00[EUR][1000 genomes]
rs73525115	1.00[EUR][1000 genomes]
rs73529387	1.00[EUR][1000 genomes]
rs8101797	1.00[EUR][1000 genomes]
rs8102661	1.00[EUR][1000 genomes]
rs8103073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8103429	1.00[EUR][1000 genomes]
rs8105314	1.00[EUR][1000 genomes]
rs8107049	1.00[EUR][1000 genomes]
rs8107327	1.00[EUR][1000 genomes]
rs845379	1.00[EUR][1000 genomes]
rs9749302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
2	esv1837595	chr19:18085428-18393682	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv833775	chr19:18213761-18390074	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv911251	chr19:18224729-18422364	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv911253	chr19:18240127-18418044	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
6	nsv916325	chr19:18244780-18534927	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
7	nsv470131	chr19:18326222-18389135	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	esv3323899	chr19:18343484-18620429	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	162 gene(s)	inside rSNPs	diseases
9	nsv911268	chr19:18351674-18395537	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	103 gene(s)	inside rSNPs	diseases
10	nsv911269	chr19:18351674-18418044	Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
11	nsv911270	chr19:18351674-18422364	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
12	nsv911271	chr19:18362940-18453124	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	135 gene(s)	inside rSNPs	diseases
13	nsv828472	chr19:18377725-18404131	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	117 gene(s)	inside rSNPs	diseases
14	esv1833305	chr19:18378219-18408222	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	117 gene(s)	inside rSNPs	diseases
15	nsv911272	chr19:18378219-18439383	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	135 gene(s)	inside rSNPs	diseases
16	nsv578744	chr19:18380072-18392873	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
17	esv1793726	chr19:18381600-18400786	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	104 gene(s)	inside rSNPs	diseases
18	nsv911273	chr19:18386798-18454825	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18366400-18389400	Weak transcription	Fetal Brain Male	brain
2	chr19:18366600-18390000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:18377200-18388800	Weak transcription	Dnd41	blood
4	chr19:18377800-18388800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:18378200-18388800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr19:18378200-18389000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:18379400-18388800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:18379400-18388800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:18379400-18389000	Weak transcription	Aorta	Aorta
10	chr19:18380400-18388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:18380400-18388800	Weak transcription	Fetal Brain Female	brain
12	chr19:18384000-18388800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr19:18384400-18388800	Genic enhancers	Placenta	Placenta
14	chr19:18384400-18389000	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr19:18384600-18388800	Strong transcription	Thymus	Thymus
16	chr19:18384600-18389000	Genic enhancers	Fetal Intestine Large	intestine
17	chr19:18384600-18389800	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr19:18385000-18388800	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr19:18385200-18388600	Enhancers	Liver	Liver
20	chr19:18385200-18389000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:18385400-18388800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
22	chr19:18385400-18390200	Genic enhancers	Spleen	Spleen
23	chr19:18385600-18389600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr19:18385800-18388800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:18385800-18388800	Weak transcription	Brain Germinal Matrix	brain
26	chr19:18386000-18389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr19:18386000-18389000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr19:18386000-18390000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr19:18386200-18388800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:18386200-18388800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr19:18386200-18388800	Weak transcription	Fetal Heart	heart
32	chr19:18386400-18389000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr19:18386600-18388800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr19:18386600-18388800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:18386600-18388800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr19:18386600-18388800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr19:18386600-18388800	Weak transcription	Brain Substantia Nigra	brain
38	chr19:18386600-18388800	Weak transcription	Fetal Lung	lung
39	chr19:18386600-18389000	Weak transcription	Primary B cells from cord blood	blood
40	chr19:18386600-18389000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr19:18386800-18388800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:18386800-18388800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr19:18386800-18388800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr19:18386800-18388800	Weak transcription	Brain Angular Gyrus	brain
45	chr19:18386800-18388800	Weak transcription	Fetal Kidney	kidney
46	chr19:18386800-18388800	Weak transcription	Left Ventricle	heart
47	chr19:18386800-18388800	Weak transcription	Right Atrium	heart
48	chr19:18386800-18388800	Weak transcription	HSMM	muscle
49	chr19:18386800-18388800	Weak transcription	HUVEC	blood vessel
50	chr19:18386800-18388800	Weak transcription	K562	blood

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