Variant report

Variant	rs11881151
Chromosome Location	chr19:44501929-44501930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44501460..44503364-chr19:44505726..44508056,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF45-2	chr19:44501048-44503384	ENSG00000266921.1
2	lnc-ZNF45-2	chr19:44501048-44502536	NONHSAT066650
3	lnc-ZNF45-2	chr19:44501051-44501947	ENSG00000266921.1

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10418363	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11083732	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11083733	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12232810	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1996408	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2191566	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2270196	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356549	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35292176	0.86[EUR][1000 genomes]
rs367209	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs367499	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs369106	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs377503	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs384544	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs390369	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803667	0.85[ASN][1000 genomes]
rs55703004	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56101767	0.96[EUR][1000 genomes]
rs56171514	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59963278	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62119173	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6509133	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7245749	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7252394	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7253205	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7255145	0.83[ASN][1000 genomes]
rs7255315	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7256908	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7258517	0.84[ASN][1000 genomes]
rs8105571	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44489200-44506200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr19:44489200-44506200	Weak transcription	Hela-S3	cervix
3	chr19:44489600-44506200	Weak transcription	HepG2	liver
4	chr19:44491000-44503400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:44491000-44503800	ZNF genes & repeats	Liver	Liver
6	chr19:44491400-44503400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr19:44491800-44502200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:44492000-44502000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:44492400-44502000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:44492400-44502200	Strong transcription	Fetal Intestine Large	intestine
11	chr19:44492400-44502200	Strong transcription	HSMM	muscle
12	chr19:44492400-44502400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:44492400-44502400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr19:44492400-44502600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr19:44492600-44502000	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr19:44492600-44502200	Strong transcription	Dnd41	blood
17	chr19:44492600-44502400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:44492600-44502400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:44492600-44502600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:44492800-44502000	Strong transcription	Brain Substantia Nigra	brain
21	chr19:44492800-44502000	Strong transcription	Fetal Thymus	thymus
22	chr19:44492800-44502000	Strong transcription	HSMMtube	muscle
23	chr19:44492800-44502200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr19:44493200-44502200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:44493400-44502000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:44493400-44502400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr19:44493600-44502200	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr19:44494400-44502000	Strong transcription	Right Ventricle	heart
29	chr19:44496600-44503200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr19:44496600-44506200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr19:44497000-44506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr19:44497000-44506600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr19:44498400-44502400	Strong transcription	Psoas Muscle	Psoas
34	chr19:44498600-44502000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:44498800-44502000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr19:44499000-44502000	ZNF genes & repeats	Pancreas	Pancrea
37	chr19:44499000-44502400	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr19:44499200-44502000	ZNF genes & repeats	Aorta	Aorta
39	chr19:44499200-44506200	Weak transcription	Fetal Heart	heart
40	chr19:44499200-44506200	Weak transcription	NHDF-Ad	bronchial
41	chr19:44499200-44506200	Weak transcription	NHLF	lung
42	chr19:44499600-44502000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
43	chr19:44500000-44502000	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr19:44500000-44502400	Strong transcription	Fetal Brain Female	brain
45	chr19:44500200-44502000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr19:44500200-44502200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr19:44500200-44502200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr19:44500200-44502200	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr19:44500200-44502400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:44500200-44502400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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