Variant report

Variant	rs35292176
Chromosome Location	chr19:44501627-44501628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44501460..44503364-chr19:44505726..44508056,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF45-2	chr19:44501048-44503384	ENSG00000266921.1
2	lnc-ZNF45-2	chr19:44501048-44502536	NONHSAT066650
3	lnc-ZNF45-2	chr19:44501051-44501947	ENSG00000266921.1

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10418363	0.80[EUR][1000 genomes]
rs11083732	0.87[EUR][1000 genomes]
rs11083733	0.88[EUR][1000 genomes]
rs11881151	0.86[EUR][1000 genomes]
rs12232810	0.83[EUR][1000 genomes]
rs2191566	0.81[EUR][1000 genomes]
rs2270196	0.89[EUR][1000 genomes]
rs2356549	0.84[EUR][1000 genomes]
rs367209	0.83[EUR][1000 genomes]
rs367499	0.83[EUR][1000 genomes]
rs369106	0.83[EUR][1000 genomes]
rs377503	0.81[EUR][1000 genomes]
rs384544	0.83[EUR][1000 genomes]
rs390369	0.82[EUR][1000 genomes]
rs446016	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55703004	0.86[EUR][1000 genomes]
rs56101767	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56171514	0.89[EUR][1000 genomes]
rs59963278	0.87[EUR][1000 genomes]
rs62119173	0.88[EUR][1000 genomes]
rs6509133	0.84[EUR][1000 genomes]
rs7245749	0.88[EUR][1000 genomes]
rs7252394	0.90[EUR][1000 genomes]
rs7253205	0.87[EUR][1000 genomes]
rs7255315	0.88[EUR][1000 genomes]
rs7256908	0.81[EUR][1000 genomes]
rs8105571	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44489200-44506200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr19:44489200-44506200	Weak transcription	Hela-S3	cervix
3	chr19:44489600-44506200	Weak transcription	HepG2	liver
4	chr19:44491000-44503400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:44491000-44503800	ZNF genes & repeats	Liver	Liver
6	chr19:44491400-44503400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr19:44491600-44501800	Strong transcription	Brain Hippocampus Middle	brain
8	chr19:44491800-44502200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr19:44492000-44502000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:44492400-44501800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr19:44492400-44501800	Strong transcription	Brain Cingulate Gyrus	brain
12	chr19:44492400-44502000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr19:44492400-44502200	Strong transcription	Fetal Intestine Large	intestine
14	chr19:44492400-44502200	Strong transcription	HSMM	muscle
15	chr19:44492400-44502400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:44492400-44502400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr19:44492400-44502600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr19:44492600-44502000	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr19:44492600-44502200	Strong transcription	Dnd41	blood
20	chr19:44492600-44502400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:44492600-44502400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:44492600-44502600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:44492800-44502000	Strong transcription	Brain Substantia Nigra	brain
24	chr19:44492800-44502000	Strong transcription	Fetal Thymus	thymus
25	chr19:44492800-44502000	Strong transcription	HSMMtube	muscle
26	chr19:44492800-44502200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr19:44493200-44501800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr19:44493200-44501800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:44493200-44501800	Strong transcription	Placenta	Placenta
30	chr19:44493200-44501800	Strong transcription	Fetal Stomach	stomach
31	chr19:44493200-44502200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:44493400-44501800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:44493400-44502000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:44493400-44502400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:44493600-44502200	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr19:44494400-44502000	Strong transcription	Right Ventricle	heart
37	chr19:44496600-44503200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr19:44496600-44506200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:44497000-44506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr19:44497000-44506600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr19:44498400-44502400	Strong transcription	Psoas Muscle	Psoas
42	chr19:44498600-44502000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr19:44498800-44502000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr19:44499000-44502000	ZNF genes & repeats	Pancreas	Pancrea
45	chr19:44499000-44502400	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr19:44499200-44502000	ZNF genes & repeats	Aorta	Aorta
47	chr19:44499200-44506200	Weak transcription	Fetal Heart	heart
48	chr19:44499200-44506200	Weak transcription	NHDF-Ad	bronchial
49	chr19:44499200-44506200	Weak transcription	NHLF	lung
50	chr19:44499600-44502000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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