Variant report

Variant	rs11882130
Chromosome Location	chr19:21372950-21372951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21257717..21259573-chr19:21372943..21374798,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF431-2	chr19:21372668-21373029	NONHSAT063688

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11880246	1.00[AMR][1000 genomes]
rs8110312	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv911414	chr19:21355473-21454672	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21333000-21373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:21363800-21374000	Weak transcription	Pancreas	Pancrea
3	chr19:21365200-21373200	Strong transcription	HSMM	muscle
4	chr19:21365800-21374400	Weak transcription	Hela-S3	cervix
5	chr19:21366400-21380400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:21367000-21377200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr19:21367000-21377800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:21367000-21379200	Weak transcription	Ovary	ovary
9	chr19:21367000-21380600	Weak transcription	Placenta	Placenta
10	chr19:21367200-21374400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:21367200-21374400	Weak transcription	Fetal Muscle Leg	muscle
12	chr19:21367200-21375600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr19:21367200-21377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:21367200-21377600	Weak transcription	Left Ventricle	heart
15	chr19:21367400-21379800	Weak transcription	K562	blood
16	chr19:21367800-21373800	Weak transcription	HSMMtube	muscle
17	chr19:21368400-21373200	Weak transcription	Primary T cells from cord blood	blood
18	chr19:21368600-21374600	Weak transcription	Fetal Brain Female	brain
19	chr19:21368600-21374600	Weak transcription	Fetal Lung	lung
20	chr19:21368600-21378000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:21369000-21375800	Weak transcription	Fetal Stomach	stomach
22	chr19:21369200-21373200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr19:21369200-21375200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr19:21369400-21374200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:21369400-21374600	Weak transcription	Brain Germinal Matrix	brain
26	chr19:21369600-21377600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:21370000-21380000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:21370000-21382200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr19:21370200-21374400	Weak transcription	Thymus	Thymus
30	chr19:21370200-21377600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr19:21370200-21381000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:21370600-21374000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr19:21370600-21374400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:21370600-21377600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr19:21370600-21380600	Weak transcription	Fetal Intestine Small	intestine
36	chr19:21370800-21378800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:21371000-21373400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:21371000-21373800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr19:21371000-21373800	Weak transcription	Esophagus	oesophagus
40	chr19:21371000-21374200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr19:21371000-21374600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:21371000-21377600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr19:21371400-21373200	Strong transcription	Dnd41	blood
44	chr19:21372000-21373000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr19:21372200-21373000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr19:21372200-21374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr19:21372400-21373000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:21372400-21373200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr19:21372800-21373000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:21372800-21374600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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