Variant report

Variant rs11882897
Chromosome Location chr19:20188607-20188608
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20182000-20188800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr19:20187800-20190800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr19:20188400-20188800 Active TSS Primary T regulatory cells fromperipheralblood blood
4 chr19:20188400-20188800 Enhancers Primary T killer memory cells from peripheral blood blood
5 chr19:20188400-20188800 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:20188400-20189400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
7 chr19:20188400-20189600 Active TSS Brain Hippocampus Middle brain
8 chr19:20188400-20189800 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
9 chr19:20188400-20189800 Active TSS Brain Substantia Nigra brain
10 chr19:20188400-20190000 Active TSS Brain Germinal Matrix brain
11 chr19:20188400-20190200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr19:20188400-20190200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr19:20188400-20190600 Active TSS Rectal Mucosa Donor 29 rectum
14 chr19:20188400-20191000 Active TSS ES-I3 Cell Line embryonic stem cell
15 chr19:20188600-20188800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr19:20188600-20188800 Active TSS Primary neutrophils fromperipheralblood blood
17 chr19:20188600-20188800 Active TSS Primary B cells from cord blood blood
18 chr19:20188600-20188800 Flanking Active TSS Primary T cells from cord blood blood
19 chr19:20188600-20188800 Active TSS Primary hematopoietic stem cells blood
20 chr19:20188600-20188800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
21 chr19:20188600-20188800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
22 chr19:20188600-20188800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
23 chr19:20188600-20188800 Active TSS Primary T helper 17 cells PMA-I stimulated --
24 chr19:20188600-20188800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
25 chr19:20188600-20188800 Enhancers Primary Natural Killer cells fromperipheralblood blood
26 chr19:20188600-20188800 Active TSS Primary T killer naive cells fromperipheralblood blood
27 chr19:20188600-20188800 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr19:20188600-20188800 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr19:20188600-20188800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
30 chr19:20188600-20188800 Flanking Active TSS Brain Cingulate Gyrus brain
31 chr19:20188600-20188800 Active TSS Duodenum Mucosa Duodenum
32 chr19:20188600-20188800 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
33 chr19:20188600-20188800 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
34 chr19:20188600-20188800 Enhancers Placenta Placenta
35 chr19:20188600-20188800 Active TSS Pancreas Pancrea
36 chr19:20188600-20188800 Enhancers Skeletal Muscle Female skeletal muscle
37 chr19:20188600-20188800 Active TSS Stomach Smooth Muscle stomach
38 chr19:20188600-20189000 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
39 chr19:20188600-20189000 Active TSS Thymus Thymus
40 chr19:20188600-20189200 Flanking Active TSS Primary monocytes fromperipheralblood blood
41 chr19:20188600-20189200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
42 chr19:20188600-20189600 Flanking Bivalent TSS/Enh Primary T cells fromperipheralblood blood
43 chr19:20188600-20189600 Active TSS Cortex derived primary cultured neurospheres brain
44 chr19:20188600-20189600 Active TSS Brain Inferior Temporal Lobe brain
45 chr19:20188600-20189800 Active TSS Esophagus oesophagus
46 chr19:20188600-20189800 Active TSS Fetal Brain Male brain
47 chr19:20188600-20189800 Active TSS Rectal Mucosa Donor 31 rectum
48 chr19:20188600-20189800 Active TSS Skeletal Muscle Male skeletal muscle
49 chr19:20188600-20190000 Flanking Active TSS Primary B cells from peripheral blood blood
50 chr19:20188600-20190000 Flanking Active TSS Primary T helper cells PMA-I stimulated --

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