Variant report

Variant	rs11883518
Chromosome Location	chr2:63928877-63928878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11695421	0.85[ASN][1000 genomes]
rs17619753	0.85[ASN][1000 genomes]
rs35474183	0.81[ASN][1000 genomes]
rs4233930	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926400-63935400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:63926800-63939800	Weak transcription	Adipose Nuclei	Adipose
3	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:63927000-63929000	Enhancers	NHDF-Ad	bronchial
5	chr2:63927200-63929200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:63927200-63934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:63927200-63937200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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