Variant report

Variant	rs11695421
Chromosome Location	chr2:63954237-63954238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63950790..63952982-chr2:63953048..63955151,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10183479	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125981	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11558741	0.92[ASN][1000 genomes]
rs11674020	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11676710	0.81[ASN][1000 genomes]
rs11677338	0.85[AFR][1000 genomes]
rs11686956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11691987	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11693906	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11694253	0.91[ASN][1000 genomes]
rs11883518	0.85[ASN][1000 genomes]
rs12713498	0.92[ASN][1000 genomes]
rs12991311	0.85[AFR][1000 genomes]
rs12996866	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13006124	0.88[AFR][1000 genomes]
rs13018690	0.88[ASN][1000 genomes]
rs13431781	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1440002	0.90[ASN][1000 genomes]
rs17562177	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17619717	0.88[AFR][1000 genomes]
rs17619753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302808	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34122334	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35002211	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35474183	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35697586	0.81[ASN][1000 genomes]
rs36033991	0.90[ASN][1000 genomes]
rs4233930	0.83[ASN][1000 genomes]
rs4538187	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4671071	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546029	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6546030	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6546032	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6546033	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6546035	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66980330	0.92[ASN][1000 genomes]
rs6715992	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67308158	0.92[ASN][1000 genomes]
rs6731508	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6732746	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6742187	0.90[AFR][1000 genomes]
rs6755646	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67615384	0.88[ASN][1000 genomes]
rs67765474	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72808243	0.88[ASN][1000 genomes]
rs7590399	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7597935	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63952400-63956600	Weak transcription	HepG2	liver
4	chr2:63953400-63954400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:63953400-63954800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:63953600-63954800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:63953600-63956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:63954000-63954400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:63954200-63954400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:63954200-63956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:63954200-63956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:63954200-63956800	Enhancers	Liver	Liver

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