Variant report

Variant	rs13006124
Chromosome Location	chr2:63961179-63961180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63960179..63963716-chr2:63967320..63970574,3	MCF-7	breast:
2	chr2:63946142..63947808-chr2:63959006..63961563,2	MCF-7	breast:
3	chr2:63960746..63963454-chr2:64068173..64070069,3	MCF-7	breast:
4	chr2:63960550..63964590-chr2:64064036..64069240,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10183479	0.84[YRI][hapmap]
rs10201844	0.84[CHB][hapmap]
rs10211360	0.85[CHB][hapmap]
rs10865343	0.85[CHB][hapmap]
rs10865344	0.85[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs11125981	0.83[AFR][1000 genomes]
rs11677338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686956	0.86[AFR][1000 genomes]
rs11691987	0.84[YRI][hapmap]
rs11695421	0.88[AFR][1000 genomes]
rs12713497	0.84[CHB][hapmap]
rs12991311	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384707	0.85[CHB][hapmap]
rs17619717	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17619753	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs35474183	0.87[AFR][1000 genomes]
rs4318375	0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4538187	0.92[YRI][hapmap]
rs4671528	0.84[CHB][hapmap]
rs6546025	0.81[CHB][hapmap]
rs6546026	0.81[CHB][hapmap]
rs6546029	0.84[YRI][hapmap]
rs6546030	0.84[YRI][hapmap]
rs6546039	0.84[CHB][hapmap]
rs6710230	0.84[YRI][hapmap]
rs6715992	0.84[YRI][hapmap]
rs6726257	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6737855	0.85[CHB][hapmap]
rs6741298	0.84[CHB][hapmap]
rs6741584	0.85[CHB][hapmap]
rs6742187	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747307	0.85[CHB][hapmap]
rs6755646	0.84[YRI][hapmap]
rs7590399	0.84[YRI][hapmap]
rs7596262	0.81[CHB][hapmap]
rs7597935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309356	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63955600-63963600	Weak transcription	Aorta	Aorta
2	chr2:63955600-63964200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63956800-63962400	Weak transcription	Psoas Muscle	Psoas
4	chr2:63957400-63968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:63957400-63971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:63959600-63961200	Weak transcription	Liver	Liver
7	chr2:63960600-63962000	Enhancers	HepG2	liver
8	chr2:63960800-63961800	Enhancers	A549	lung
9	chr2:63961000-63961200	Enhancers	Fetal Lung	lung

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