Variant report

Variant	rs6726257
Chromosome Location	chr2:64042093-64042094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64039181..64043797-chr2:64066250..64069522,4	MCF-7	breast:
2	chr2:64039751..64042617-chr2:64066730..64068946,3	MCF-7	breast:
3	chr2:64040046..64042869-chr2:64061752..64064399,2	K562	blood:
4	chr2:64040180..64042427-chr2:64066640..64069360,2	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10168446	0.81[ASN][1000 genomes]
rs10183479	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10199273	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10201844	0.83[CHB][hapmap]
rs10211360	0.84[CHB][hapmap]
rs10865342	0.88[AFR][1000 genomes]
rs10865343	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs10865344	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11125987	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11677338	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11682249	0.92[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11686956	0.82[AFR][1000 genomes]
rs11691987	0.84[YRI][hapmap]
rs12713497	0.83[CHB][hapmap]
rs12991311	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13006124	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13384707	0.84[CHB][hapmap]
rs13431781	0.81[AFR][1000 genomes]
rs1421093	0.81[EUR][1000 genomes]
rs17619717	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17619753	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs4318375	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4538187	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs4616468	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4671071	0.83[AFR][1000 genomes]
rs4671528	0.83[CHB][hapmap]
rs6546029	0.84[YRI][hapmap]
rs6546030	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs6546031	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6546036	0.82[ASN][1000 genomes]
rs6546039	0.83[CHB][hapmap]
rs6710230	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6715992	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs6737855	0.84[CHB][hapmap]
rs6741298	0.83[CHB][hapmap]
rs6741584	0.84[CHB][hapmap]
rs6742187	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747307	0.84[CHB][hapmap]
rs6755646	0.84[YRI][hapmap]
rs7589241	0.83[CHB][hapmap]
rs7590399	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs7597935	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309356	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:64031400-64043600	Weak transcription	Psoas Muscle	Psoas
3	chr2:64034600-64046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:64038600-64042200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:64041200-64044400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:64041600-64042400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:64041600-64043600	Weak transcription	Aorta	Aorta
8	chr2:64041800-64042800	Weak transcription	NH-A	brain
9	chr2:64041800-64043000	Enhancers	Liver	Liver
10	chr2:64041800-64043400	Weak transcription	Osteobl	bone
11	chr2:64041800-64043600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:64041800-64045200	Weak transcription	HSMM	muscle
13	chr2:64041800-64045400	Weak transcription	HSMMtube	muscle
14	chr2:64041800-64047000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:64041800-64054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:64042000-64043400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:64042000-64043400	Weak transcription	NHDF-Ad	bronchial
18	chr2:64042000-64047000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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