Variant report

Variant	rs6546036
Chromosome Location	chr2:64097159-64097160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64095211..64099085-chr2:64100038..64104293,5	K562	blood:
2	chr2:64068214..64070648-chr2:64096231..64099054,2	MCF-7	breast:
3	chr2:64090294..64093479-chr2:64095197..64098946,3	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10168446	0.85[ASN][1000 genomes]
rs10199273	0.87[ASN][1000 genomes]
rs11125987	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11682249	0.81[ASN][1000 genomes]
rs12991346	0.80[ASN][1000 genomes]
rs13014371	0.81[ASN][1000 genomes]
rs13021953	0.82[ASN][1000 genomes]
rs13023231	0.81[ASN][1000 genomes]
rs13034625	0.81[ASN][1000 genomes]
rs1421093	0.83[ASN][1000 genomes]
rs34506208	0.82[ASN][1000 genomes]
rs34688719	0.84[ASN][1000 genomes]
rs4318375	0.82[ASN][1000 genomes]
rs4616468	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6546031	0.93[ASN][1000 genomes]
rs6546041	0.83[ASN][1000 genomes]
rs67247064	0.84[ASN][1000 genomes]
rs6726257	0.82[ASN][1000 genomes]
rs6758381	0.81[ASN][1000 genomes]
rs6759483	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64103000	Weak transcription	Gastric	stomach
2	chr2:64077000-64100200	Weak transcription	Ovary	ovary
3	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:64083200-64097800	Weak transcription	Right Atrium	heart
10	chr2:64083200-64110200	Weak transcription	Small Intestine	intestine
11	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
12	chr2:64084600-64100000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:64085400-64098000	Weak transcription	Lung	lung
14	chr2:64085400-64098000	Weak transcription	Psoas Muscle	Psoas
15	chr2:64085400-64098400	Weak transcription	Aorta	Aorta
16	chr2:64085400-64100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:64085400-64100600	Weak transcription	Spleen	Spleen
18	chr2:64085600-64102400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:64086600-64110000	Weak transcription	Esophagus	oesophagus
20	chr2:64086800-64100400	Weak transcription	Fetal Brain Female	brain
21	chr2:64086800-64100800	Weak transcription	Fetal Kidney	kidney
22	chr2:64086800-64102800	Weak transcription	Right Ventricle	heart
23	chr2:64087200-64099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:64087600-64101800	Genic enhancers	Liver	Liver
25	chr2:64088000-64100000	Weak transcription	K562	blood
26	chr2:64088000-64107800	Weak transcription	Colonic Mucosa	Colon
27	chr2:64088800-64100600	Weak transcription	Fetal Stomach	stomach
28	chr2:64089000-64099800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:64089800-64101400	Weak transcription	Fetal Brain Male	brain
30	chr2:64090000-64102000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:64090200-64098600	Weak transcription	Hela-S3	cervix
32	chr2:64090200-64100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:64090600-64100600	Weak transcription	Fetal Intestine Small	intestine
34	chr2:64090600-64102800	Weak transcription	Stomach Mucosa	stomach
35	chr2:64091400-64110000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:64091800-64098000	Weak transcription	NHLF	lung
37	chr2:64091800-64099200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:64091800-64107800	Weak transcription	Brain Germinal Matrix	brain
39	chr2:64092000-64099800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:64092000-64100000	Weak transcription	Fetal Lung	lung
41	chr2:64092000-64100000	Weak transcription	HSMMtube	muscle
42	chr2:64092000-64100000	Weak transcription	HUVEC	blood vessel
43	chr2:64092200-64097800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:64092200-64097800	Weak transcription	Brain Hippocampus Middle	brain
45	chr2:64092200-64099000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr2:64092600-64097800	Weak transcription	NH-A	brain
47	chr2:64092600-64098000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:64092600-64099600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:64093000-64097400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:64093000-64097800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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