Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64027600..64029935-chr2:64066458..64069152,2	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10175674	0.87[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183479	0.84[YRI][hapmap]
rs10865342	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865344	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs11691987	0.84[YRI][hapmap]
rs12988017	0.84[MEX][hapmap]
rs12991311	0.84[YRI][hapmap]
rs13006124	0.84[YRI][hapmap]
rs17619753	0.92[YRI][hapmap]
rs36099158	0.84[MEX][hapmap]
rs4075010	0.91[ASN][1000 genomes]
rs4538187	0.92[YRI][hapmap]
rs4608501	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4671070	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4671072	0.84[MEX][hapmap]
rs4671533	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6546029	0.84[YRI][hapmap]
rs6546030	0.91[YRI][hapmap]
rs6715992	0.84[YRI][hapmap]
rs6726257	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6742187	0.80[AFR][1000 genomes]
rs6755646	0.84[YRI][hapmap]
rs6757016	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808216	1.00[ASN][1000 genomes]
rs72808218	0.98[ASN][1000 genomes]
rs7590399	0.84[YRI][hapmap]
rs7597935	0.85[LWK][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64020400-64032000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:64023600-64032800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:64029200-64032400	Weak transcription	Liver	Liver
4	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose

Quick Search: