Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64037390..64039956-chr2:64067889..64069550,2	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10166971	0.89[CHB][hapmap]
rs10209140	0.81[CHB][hapmap]
rs10865342	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988017	0.89[CHB][hapmap]
rs12993544	0.89[CHB][hapmap]
rs13009774	0.89[CHB][hapmap]
rs2287361	0.89[CHB][hapmap]
rs36099158	0.89[CHB][hapmap]
rs3934536	0.89[CHB][hapmap]
rs4075010	0.91[ASN][1000 genomes]
rs4544421	0.89[CHB][hapmap]
rs4599090	0.89[CHB][hapmap]
rs4608501	0.80[EUR][1000 genomes]
rs4671070	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4671072	0.89[CHB][hapmap]
rs4671535	0.89[CHB][hapmap]
rs6710230	0.87[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757016	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808216	1.00[ASN][1000 genomes]
rs72808218	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:64031400-64043600	Weak transcription	Psoas Muscle	Psoas
3	chr2:64034600-64046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:64037400-64038600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:64037400-64041400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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