Variant report

Variant	rs10865342
Chromosome Location	chr2:64032474-64032475
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10166971	0.89[CHB][hapmap]
rs10175674	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183479	0.84[YRI][hapmap]
rs10209140	0.82[CHB][hapmap]
rs10865344	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs11691987	0.84[YRI][hapmap]
rs12988017	0.89[CHB][hapmap]
rs12991311	0.85[YRI][hapmap]
rs12993544	0.89[CHB][hapmap]
rs13006124	0.85[YRI][hapmap]
rs13009774	0.89[CHB][hapmap]
rs17619753	0.92[YRI][hapmap]
rs2287361	0.89[CHB][hapmap]
rs36099158	0.89[CHB][hapmap]
rs3934536	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4075010	0.91[ASN][1000 genomes]
rs4538187	0.92[YRI][hapmap]
rs4544421	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4599090	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4608501	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4671070	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4671072	0.89[CHB][hapmap]
rs4671533	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4671535	0.89[CHB][hapmap]
rs6546029	0.84[YRI][hapmap]
rs6546030	0.91[YRI][hapmap]
rs6710230	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715992	0.84[YRI][hapmap]
rs6726257	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6742187	0.81[AFR][1000 genomes]
rs6755646	0.84[YRI][hapmap]
rs6757016	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808216	1.00[ASN][1000 genomes]
rs72808218	0.98[ASN][1000 genomes]
rs7590399	0.84[YRI][hapmap]
rs7597935	0.92[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64023600-64032800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:64031400-64043600	Weak transcription	Psoas Muscle	Psoas
4	chr2:64032400-64033200	Enhancers	Liver	Liver

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