Variant report

Variant	rs10865344
Chromosome Location	chr2:64058588-64058589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64052722..64054582-chr2:64057753..64060743,2	K562	blood:
2	chr2:64052299..64060510-chr2:64066102..64071144,11	MCF-7	breast:
3	chr2:64056669..64059185-chr2:64061882..64064384,4	K562	blood:
4	chr2:64056452..64059358-chr2:64067100..64070208,5	K562	blood:
5	chr2:64044766..64046674-chr2:64057658..64060630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10183479	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs10187013	0.94[CHB][hapmap]
rs10199273	0.83[EUR][1000 genomes]
rs10865342	0.84[AFR][1000 genomes]
rs11558741	0.81[AFR][1000 genomes]
rs11674020	0.81[AFR][1000 genomes]
rs11677338	0.88[EUR][1000 genomes]
rs11682249	0.92[CEU][hapmap]
rs11686956	0.80[AFR][1000 genomes]
rs11691987	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs12991311	0.85[CEU][hapmap];0.92[YRI][hapmap];0.91[EUR][1000 genomes]
rs13006124	0.85[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs13431781	0.85[AFR][1000 genomes]
rs17619717	0.82[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17619753	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs34777730	0.91[YRI][hapmap]
rs4538187	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4616468	0.82[EUR][1000 genomes]
rs4671071	0.88[AFR][1000 genomes]
rs4671073	0.84[YRI][hapmap]
rs6546029	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs6546030	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs6546031	0.88[AFR][1000 genomes]
rs6710230	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs6715992	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs6726257	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6732746	0.82[AFR][1000 genomes]
rs6742187	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6755646	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs7590399	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs7597935	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:64053200-64064400	Weak transcription	Aorta	Aorta
3	chr2:64053400-64059200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:64055200-64059200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:64055200-64064400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:64055200-64067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:64055400-64063600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:64055400-64066400	Weak transcription	Psoas Muscle	Psoas
9	chr2:64055600-64064000	Weak transcription	HMEC	breast
10	chr2:64055800-64059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:64056400-64064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:64056600-64059200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:64056600-64059400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links