Variant report

Variant	rs17619717
Chromosome Location	chr2:63943257-63943258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10201844	0.84[CHB][hapmap]
rs10211360	0.85[CHB][hapmap]
rs10865343	0.85[CHB][hapmap]
rs10865344	0.82[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11125981	0.83[AFR][1000 genomes]
rs11677338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11686956	0.90[AFR][1000 genomes]
rs11695421	0.88[AFR][1000 genomes]
rs12713497	0.84[CHB][hapmap]
rs12991311	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13006124	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13384707	0.85[CHB][hapmap]
rs17619753	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs35474183	0.83[AFR][1000 genomes]
rs4318375	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4538187	0.85[YRI][hapmap]
rs4616468	0.80[ASN][1000 genomes]
rs4671528	0.84[CHB][hapmap]
rs6546025	0.81[CHB][hapmap]
rs6546026	0.81[CHB][hapmap]
rs6546039	0.84[CHB][hapmap]
rs6726257	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6737855	0.85[CHB][hapmap]
rs6741298	0.84[CHB][hapmap]
rs6741584	0.85[CHB][hapmap]
rs6742187	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6747307	0.85[CHB][hapmap]
rs7597935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9309356	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63936200-63944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:63940600-63946200	Weak transcription	Psoas Muscle	Psoas
5	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:63942800-63943600	Enhancers	Liver	Liver
9	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell

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