Variant report

Variant	rs10201844
Chromosome Location	chr2:64041944-64041945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64039181..64043797-chr2:64066250..64069522,4	MCF-7	breast:
2	chr2:64039751..64042617-chr2:64066730..64068946,3	MCF-7	breast:
3	chr2:64040046..64042869-chr2:64061752..64064399,2	K562	blood:
4	chr2:64040180..64042427-chr2:64066640..64069360,2	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10187013	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs10207847	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10211360	0.89[CHB][hapmap]
rs10865343	0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11125985	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11125986	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12612549	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12612596	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613707	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12713497	0.89[CHB][hapmap]
rs13006124	0.84[CHB][hapmap]
rs13384707	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1362797	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1440004	0.81[EUR][1000 genomes]
rs17619717	0.84[CHB][hapmap]
rs2054119	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2302809	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36042418	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4072113	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293553	0.89[ASW][hapmap]
rs4359637	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4399712	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4671526	0.88[EUR][1000 genomes]
rs4671528	0.89[CHB][hapmap]
rs4671532	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546025	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6546026	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6546027	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546038	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs6546039	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6546043	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs6546046	0.95[CEU][hapmap];0.84[CHB][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap]
rs6705192	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6726257	0.83[CHB][hapmap]
rs6737855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741298	0.89[CHB][hapmap]
rs6741584	0.89[CHB][hapmap]
rs6746875	0.81[EUR][1000 genomes]
rs6747307	0.89[CHB][hapmap]
rs7589241	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs7596262	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs7597935	0.84[CHB][hapmap]
rs9309356	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998043	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:64031400-64043600	Weak transcription	Psoas Muscle	Psoas
3	chr2:64034600-64046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:64038600-64042200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:64041200-64042000	Enhancers	NHDF-Ad	bronchial
6	chr2:64041200-64042000	Enhancers	NHEK	skin
7	chr2:64041200-64044400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:64041400-64042000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:64041400-64042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:64041600-64042000	Enhancers	HMEC	breast
11	chr2:64041600-64042000	Enhancers	HUVEC	blood vessel
12	chr2:64041600-64042400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:64041600-64043600	Weak transcription	Aorta	Aorta
14	chr2:64041800-64042800	Weak transcription	NH-A	brain
15	chr2:64041800-64043000	Enhancers	Liver	Liver
16	chr2:64041800-64043400	Weak transcription	Osteobl	bone
17	chr2:64041800-64043600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:64041800-64045200	Weak transcription	HSMM	muscle
19	chr2:64041800-64045400	Weak transcription	HSMMtube	muscle
20	chr2:64041800-64047000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:64041800-64054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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