Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63924196..63929131-chr2:64067029..64071463,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168461	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10200146	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs10201844	0.89[CHB][hapmap]
rs12612549	0.84[CHB][hapmap]
rs12713497	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13006124	0.85[CHB][hapmap]
rs13384707	0.90[CHB][hapmap]
rs17619717	0.85[CHB][hapmap]
rs2168274	0.86[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4072113	0.84[CHB][hapmap]
rs4671528	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546025	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6546026	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6546038	0.83[CHB][hapmap]
rs6546039	0.89[CHB][hapmap]
rs6726257	0.84[CHB][hapmap]
rs6737855	0.90[CHB][hapmap]
rs6741298	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747307	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7597935	0.84[CHB][hapmap]
rs9309356	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926400-63935400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:63926800-63939800	Weak transcription	Adipose Nuclei	Adipose
3	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:63927000-63929000	Enhancers	NHDF-Ad	bronchial
5	chr2:63927200-63929200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:63927200-63934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:63927200-63937200	Weak transcription	Psoas Muscle	Psoas

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