Variant report

Variant	rs10168461
Chromosome Location	chr2:63917221-63917222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10200146	0.94[JPT][hapmap]
rs10211360	0.85[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11125979	0.80[CHB][hapmap]
rs11676682	0.85[CHB][hapmap]
rs12713497	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17618390	0.81[JPT][hapmap]
rs2028886	0.81[CHB][hapmap]
rs2168274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2278718	0.81[JPT][hapmap]
rs2421954	0.90[CHB][hapmap]
rs2422008	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2592389	0.83[ASN][1000 genomes]
rs262496	0.85[CHB][hapmap]
rs262498	0.95[CHB][hapmap]
rs3754540	0.81[CHB][hapmap]
rs4671526	0.88[ASN][1000 genomes]
rs4671528	0.88[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6735907	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs6737621	0.85[CHB][hapmap]
rs6741298	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6741584	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6747307	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8179835	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas

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