Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:63922868-63923098	HepG2	liver:	n/a	chr2:63923002-63923013

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63814867..63817469-chr2:63922056..63924960,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168461	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10201844	0.89[CHB][hapmap]
rs10209140	0.81[JPT][hapmap]
rs10211360	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12612549	0.84[CHB][hapmap]
rs12713497	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13006124	0.85[CHB][hapmap]
rs13384707	0.90[CHB][hapmap]
rs17619717	0.85[CHB][hapmap]
rs2168274	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4072113	0.84[CHB][hapmap]
rs4671528	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6546025	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs6546026	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs6546038	0.84[CHB][hapmap]
rs6546039	0.89[CHB][hapmap]
rs6726257	0.84[CHB][hapmap]
rs6737855	0.90[CHB][hapmap]
rs6741298	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6741584	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7597935	0.84[CHB][hapmap]
rs9309356	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas
3	chr2:63919600-63923000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:63919800-63925400	Weak transcription	A549	lung
5	chr2:63920800-63925800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:63921000-63923000	Enhancers	Liver	Liver
7	chr2:63921200-63925400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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