Variant report

Variant	rs9309356
Chromosome Location	chr2:63943016-63943017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:63943005-63943213	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000228872	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10187013	0.95[CEU][hapmap];0.88[YRI][hapmap]
rs10201844	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10207847	0.81[EUR][1000 genomes]
rs10211360	0.90[CHB][hapmap]
rs10865343	0.90[CHB][hapmap]
rs11125985	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11125986	0.82[EUR][1000 genomes]
rs12612549	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs12612596	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12613707	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12713497	0.89[CHB][hapmap]
rs13006124	0.85[CHB][hapmap]
rs13384707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1362797	0.83[EUR][1000 genomes]
rs17619717	0.85[CHB][hapmap]
rs2054119	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2302809	0.80[EUR][1000 genomes]
rs36042418	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4072113	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4359637	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4399712	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4671526	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4671528	0.89[CHB][hapmap]
rs4671532	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546025	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6546026	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6546027	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546038	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs6546039	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs6705192	0.81[EUR][1000 genomes]
rs6726257	0.84[CHB][hapmap]
rs6737855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6741298	0.89[CHB][hapmap]
rs6741584	0.90[CHB][hapmap]
rs6747307	0.90[CHB][hapmap]
rs7426051	0.81[EUR][1000 genomes]
rs7597935	0.84[CHB][hapmap]
rs998043	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63936200-63944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:63940600-63946200	Weak transcription	Psoas Muscle	Psoas
5	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:63941200-63946200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:63942400-63943200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:63942400-63943200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:63942600-63943200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:63942800-63943600	Enhancers	Liver	Liver
12	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell

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