Variant report

Variant	rs998043
Chromosome Location	chr2:63959535-63959536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63946142..63947808-chr2:63959006..63961563,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10187013	0.95[CEU][hapmap];0.85[YRI][hapmap]
rs10201844	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10211360	0.89[CHB][hapmap]
rs10865343	0.89[CHB][hapmap]
rs11125985	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12612549	0.95[CEU][hapmap];0.84[CHB][hapmap];0.90[GIH][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12612596	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12613707	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12713497	0.89[CHB][hapmap]
rs13006124	0.84[CHB][hapmap]
rs13384707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362797	0.81[EUR][1000 genomes]
rs17619717	0.84[CHB][hapmap]
rs2054119	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36042418	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3754540	0.81[MEX][hapmap]
rs4072113	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4293553	0.81[TSI][hapmap]
rs4359637	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4399712	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4671526	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4671528	0.89[CHB][hapmap]
rs4671532	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546025	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6546026	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6546027	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6546038	0.95[CEU][hapmap];0.84[CHB][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap]
rs6546039	0.95[CEU][hapmap];0.89[CHB][hapmap];0.81[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs6726257	0.83[CHB][hapmap]
rs6737855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6741298	0.89[CHB][hapmap]
rs6741584	0.89[CHB][hapmap]
rs6747307	0.89[CHB][hapmap]
rs7596262	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs7597935	0.84[CHB][hapmap]
rs9309356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63955600-63963600	Weak transcription	Aorta	Aorta
2	chr2:63955600-63964200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63956800-63962400	Weak transcription	Psoas Muscle	Psoas
4	chr2:63957200-63960800	Weak transcription	A549	lung
5	chr2:63957400-63968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:63957400-63971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:63957600-63960600	Weak transcription	HepG2	liver
8	chr2:63958000-63959600	Enhancers	Liver	Liver

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