Variant report

Variant	rs4359637
Chromosome Location	chr2:64008672-64008673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10187013	0.95[CEU][hapmap];0.88[YRI][hapmap]
rs10201844	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10207847	0.81[EUR][1000 genomes]
rs10211360	0.80[CHB][hapmap]
rs10865343	0.81[CHB][hapmap]
rs11125985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11125986	0.82[EUR][1000 genomes]
rs12612549	0.95[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12612596	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12613707	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13384707	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362797	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2054119	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36042418	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4072113	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4399712	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4671526	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4671532	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6546025	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6546026	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6546027	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6546038	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs6546039	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs6705192	0.81[EUR][1000 genomes]
rs6737855	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6741584	0.81[CHB][hapmap]
rs6747307	0.81[CHB][hapmap]
rs7426051	0.81[EUR][1000 genomes]
rs7596262	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs9309356	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs998043	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:64006200-64010000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:64006200-64011200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:64006400-64009000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:64006400-64010200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:64006400-64010400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:64006600-64008800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:64006600-64009000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:64006600-64009400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:64006600-64010400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:64007000-64009600	Enhancers	HSMMtube	muscle
12	chr2:64007400-64009800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:64007600-64009000	Enhancers	Brain Germinal Matrix	brain
14	chr2:64007800-64008800	Enhancers	NHDF-Ad	bronchial
15	chr2:64008000-64009000	Enhancers	Ovary	ovary
16	chr2:64008000-64010200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr2:64008000-64018400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:64008200-64009000	Enhancers	Adipose Nuclei	Adipose
19	chr2:64008200-64009200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:64008200-64012200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:64008200-64013600	Weak transcription	NHLF	lung
22	chr2:64008200-64016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:64008400-64009000	Weak transcription	Aorta	Aorta
24	chr2:64008400-64009200	Enhancers	Brain Substantia Nigra	brain
25	chr2:64008400-64009600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:64008400-64011800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:64008400-64016600	Weak transcription	Fetal Muscle Leg	muscle
28	chr2:64008600-64009200	Enhancers	Psoas Muscle	Psoas
29	chr2:64008600-64009600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:64008600-64011000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:64008600-64015200	Weak transcription	HSMM	muscle

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