Variant report

Variant	rs4671532
Chromosome Location	chr2:63986847-63986848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63973035..63975421-chr2:63985451..63987233,2	MCF-7	breast:
2	chr2:63963420..63965599-chr2:63986066..63988393,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10187013	0.95[CEU][hapmap];0.88[YRI][hapmap]
rs10201844	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10211360	0.90[CHB][hapmap]
rs10865343	0.90[CHB][hapmap]
rs11125985	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612549	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs12612596	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12613707	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12713497	0.89[CHB][hapmap]
rs13006124	0.85[CHB][hapmap]
rs13384707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362797	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17619717	0.85[CHB][hapmap]
rs2054119	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36042418	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072113	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4359637	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4399712	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671526	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4671528	0.89[CHB][hapmap]
rs6546025	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6546026	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6546027	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546038	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs6546039	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6726257	0.84[CHB][hapmap]
rs6737855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6741298	0.89[CHB][hapmap]
rs6741584	0.90[CHB][hapmap]
rs6747307	0.90[CHB][hapmap]
rs7596262	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs7597935	0.84[CHB][hapmap]
rs9309356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998043	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63973000-63992800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:63973200-63990400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:63975200-63990200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:63984400-63990200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:63984400-63990200	Weak transcription	NHLF	lung
7	chr2:63984800-63989800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:63985000-63989800	Weak transcription	NHDF-Ad	bronchial
9	chr2:63985200-63989800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:63985600-63992400	Weak transcription	Psoas Muscle	Psoas
11	chr2:63986400-63987200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:63986600-63987000	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:63986600-63987000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:63986600-63987000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:63986600-63987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr2:63986800-63987000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:63986800-63987200	Enhancers	Dnd41	blood

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